PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g43160.1
Common NameLOC4346214, Os08g0544800, OsJ_027020, P0623F08.31, PCF2
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TCP
Protein Properties Length: 374aa    MW: 38500.7 Da    PI: 5.0727
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g43160.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.54.1e-3773172694
               TCP   6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........eaesssssasnsssg.. 88 
                        r+ ++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLlqq++pai+++tgt++ +a ++         ++sssss      g  
  LOC_Os08g43160.1  73 PRNRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTGTVPAIATtvdgvlriPTQSSSSS------Gpa 159
                       6999********************************************************666663333222222211112222......122 PP

               TCP  89 ........kaaksa 94 
                               + ++++
  LOC_Os08g43160.1 160 ssavvdgeE-SSAK 172
                       222233221.1111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.38175129IPR017887Transcription factor TCP subgroup
PfamPF036341.6E-3075166IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009038anatomypalea
PO:0001048developmental stagepalea development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MEAQAQDKAE EGEEEGTRQQ HAQAGPVGAA GGGGGGGAAA VAMSAIPMNS WLVPKPEPVE  60
FFGGMAMVRK PPPRNRDRHT KVEGRGRRIR MPAACAARIF QLTRELGHKS DGETIRWLLQ  120
QSEPAIIAAT GTGTVPAIAT TVDGVLRIPT QSSSSSGPAS SAVVDGEESS AKRRRKLQPT  180
RAVAGASPLA TAAPAAYYPV IADPLLQGSG GAAISVPSGL APITATGAPQ GLVPVFAVPA  240
TGSPAVAGGN RMIPQATAVW MVPQPAGAAG AGNQPTQFWA IQSAPQLVNF AGAQFPTAIN  300
VADFQQQQQQ QPVSTTIVQN SNSGEHMHFS GADSHEQQRR GRKEGNSGGV VDHPEEDEDD  360
DDDEPVSDSS PEE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.573580.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379892830.0
Expression AtlasQ6ZBH6-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings and leaves, mostly in the lower region rich in dividing cells. {ECO:0000269|PubMed:9338963}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}.
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g43160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g43160
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0605360.0AK060536.1 Oryza sativa Japonica Group cDNA clone:001-021-D02, full insert sequence.
GenBankAK1196600.0AK119660.1 Oryza sativa Japonica Group cDNA clone:002-130-H12, full insert sequence.
GenBankAP0046320.0AP004632.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0623F08.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648330.10.0transcription factor PCF2
SwissprotA2YXQ10.0PCF2_ORYSI; Transcription factor PCF2
SwissprotQ6ZBH60.0PCF2_ORYSJ; Transcription factor PCF2
TrEMBLA0A0E0IFC90.0A0A0E0IFC9_ORYNI; Uncharacterized protein
TrEMBLA0A0E0QLZ00.0A0A0E0QLZ0_ORYRU; Uncharacterized protein
STRINGORUFI08G24920.10.0(Oryza rufipogon)
STRINGOS08T0544800-010.0(Oryza sativa)
STRINGONIVA08G25460.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39123167
Representative plantOGRP31781129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.12e-45TCP family protein
Publications ? help Back to Top
  1. Kosugi S,Ohashi Y
    DNA binding and dimerization specificity and potential targets for the TCP protein family.
    Plant J., 2002. 30(3): p. 337-48
    [PMID:12000681]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Kosugi S,Ohashi Y
    PCF1 and PCF2 specifically bind to cis elements in the rice proliferating cell nuclear antigen gene.
    Plant Cell, 1997. 9(9): p. 1607-19
    [PMID:9338963]