PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g43090.1
Common NameLOC4346208, Os08g0543900, OSNPB_080543900
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 465aa    MW: 49683.3 Da    PI: 7.1309
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g43090.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.42e-10322378561
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                       kr +r   NR +A rs +RK  +i+eLe kv++L++e ++L  +l +l+  +  l +
  LOC_Os08g43090.1 322 KRVKRILANRQSAARSKERKMRYIQELEHKVQVLQTEATTLSAQLTMLQRDSTGLAT 378
                       899******************************************999987766665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.7E-18318382IPR004827Basic-leucine zipper domain
PfamPF077163.2E-9319371IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.829320383IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.74E-12322373No hitNo description
Gene3DG3DSA:1.20.5.1701.0E-11322379No hitNo description
CDDcd147032.79E-22323374No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MDDPGAADPG ARPHHLSPGQ PPVVPRSPTP LDLSSAAAAA AAASYRRLSP SLRPPAHPQA  60
RLPSPYPQIP SSSSAAAAGS SGHHARSLSQ PLFFSLDSLP PLPYADLAAP PAIPPSPPSS  120
SSDPPPPGLP PRKGGHRRSQ SDIPFGFSHL SPPLPPPAPV KREAATAAEG CRSDGDDFAL  180
YDLVNSYMDL DGMEALNSSE ERHEDRDSRA SGTRTGSVAD SSENEAESHS TPVERKDGGG  240
KSRHCRSLSV DSFIEKLNFD ESPKLPLPSP SGGLSRSGSG SLDGGAASLF GAEFANGEFT  300
EAEKKKIMAN ERLAEIALTD PKRVKRILAN RQSAARSKER KMRYIQELEH KVQVLQTEAT  360
TLSAQLTMLQ RDSTGLATQN NELKIRLQAM EQQAQLRDAL NEALTAEVQR LKLATGEITD  420
GRMSKGLQQQ MNSQLIQLQQ LQIQQQQSSQ TTQQGQQQQP QKSA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.159270.0callus| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ0J3Z8
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g43090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g43090
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046320.0AP004632.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0623F08.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651132.10.0transcription factor VIP1
TrEMBLQ0J3Z80.0Q0J3Z8_ORYSJ; Os08g0543900 protein
STRINGOS08T0543900-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62473650
Representative plantOGRP12617181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.33e-84bZIP family protein