PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g43070.1
Common NameLOC107275552, OJ1521_G02.36, Os08g0543700, OSNPB_080543700, P0623F08.11
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 264aa    MW: 27710.5 Da    PI: 7.9909
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g43070.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.41.3e-1395139554
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       h e+Er+RR+++N +f eLr  +P+       +++Ka+ L  Av+YI +L
  LOC_Os08g43070.1  95 HVEAERQRREKLNRRFCELRAAVPTV-----SRMDKASLLADAVDYIAEL 139
                       889**********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.85390139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.36E-1295144No hitNo description
SuperFamilySSF474597.46E-1795155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-1195139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-1795151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-1296145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MDELVLSPSS FSATACFPTL DFEFCEVPDQ WLLGLGHDEL DKDAAASALA AAAASQSASN  60
DDVPRNPPAT TTTTKRRGRK PGPRSGGGGA PPIGHVEAER QRREKLNRRF CELRAAVPTV  120
SRMDKASLLA DAVDYIAELR RRVERLEAEA RRAPLAPSAA AAAAWAAGLG AGAIGRDDLV  180
VRMIGRDAAI LRLTTAAAAA RHAPARMMCA VRALNLAVQH ASVARVGGAT VQDVMVDDVP  240
AALQDEARLR AALLHTLQLA DTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-2088149263Transcription factor MYC2
5gnj_B3e-2088149263Transcription factor MYC2
5gnj_E3e-2088149263Transcription factor MYC2
5gnj_F3e-2088149263Transcription factor MYC2
5gnj_G3e-2088149263Transcription factor MYC2
5gnj_I3e-2088149263Transcription factor MYC2
5gnj_M3e-2088149263Transcription factor MYC2
5gnj_N3e-2088149263Transcription factor MYC2
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6ZBI4
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g43070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g43070
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039140.0AP003914.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1521_G02.
GenBankAP0046320.0AP004632.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0623F08.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649359.10.0transcription factor bHLH14
TrEMBLQ6ZBI40.0Q6ZBI4_ORYSJ; Os08g0543700 protein
STRINGOS08T0543700-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Representative plantOGRP1106048
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.14e-16bHLH family protein