PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g42550.1
Common NameOs08g0537900
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 542aa    MW: 58748.3 Da    PI: 9.3749
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g42550.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-19362411255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa+a++aa+ +++g
  LOC_Os08g42550.1 362 RYRGVRQRP-WGKWAAEIRDPV----KaARVWLGTFDTAEDAARAYDAAAVRFKG 411
                       7********.**********64....55**********************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF102508.1E-2089206IPR019378GDP-fucose protein O-fucosyltransferase
Gene3DG3DSA:3.30.730.103.5E-32362420IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-22362421IPR016177DNA-binding domain
PfamPF008472.8E-12362410IPR001471AP2/ERF domain
SMARTSM003801.4E-35362425IPR001471AP2/ERF domain
PROSITE profilePS5103225.198362419IPR001471AP2/ERF domain
PRINTSPR003671.0E-11363374IPR001471AP2/ERF domain
CDDcd000183.02E-12370420No hitNo description
PRINTSPR003671.0E-11385401IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009038anatomypalea
PO:0001048developmental stagepalea development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MSSSASPAAW WARSRVRILL PVIFLAPALY FLLSPPSSPP FFFTLPTSRE ESPSASGSRV  60
IWAQRRVAEW RSCGWWRAAM PAPSRRNGYI RIDCYGGLNQ LRRDLCDGIA VARLLNATMV  120
LPKFEVAAYW NESSGFADVF DVDYFIEQTR GYVEVVKDMP EEIASKEPFK VDCSKRKGHF  180
DYVETVLPAL LEHQYISLTP AMSQRRDSAI EAARGEDRKA LTAIKGTRVD RLREASDTGH  240
HRGRHKRARS SPPRHDDEPP PPPPLSPAVT GGAHGGAAWH STVLAEDVES AVIVAALTHV  300
ISSTAAEVTT AVPPVTVAPQ RAATATMFGQ QVMQQPPRGF PPLPSSSGSA ATAPEQQQPR  360
RRYRGVRQRP WGKWAAEIRD PVKAARVWLG TFDTAEDAAR AYDAAAVRFK GSKAKVNFPD  420
EVAGASIAAV QLPRHHQHHP PTSLPPLPVP AHLRPHFSLA GGQSTTPAPA AAAVAAPPRE  480
EFPDLSSYAH ILQSGDLEYD FHAAVSAGLT TTAGRSSSSS SLSMPPPSED LDYKPPFGPS  540
N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-22363422666ATERF1
3gcc_A6e-22363422666ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.73290.0callus| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379890480.0
Expression AtlasQ7XAB1-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g42550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g42550
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418270.0AY341827.1 Oryza sativa (japonica cultivar-group) AP2 domain-containing protein AP29 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660332.10.0PREDICTED: uncharacterized protein LOC102713488
TrEMBLQ7XAB10.0Q7XAB1_ORYSJ; AP2 domain-containing protein AP29
STRINGORGLA08G0225800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP736466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.11e-16related to AP2 6l