PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g42470.1
Common NameLOC4346166, OsJ_28098
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 292aa    MW: 31606.4 Da    PI: 6.6036
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g42470.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.2e-09133180455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR+ri +++  L+ l+P +    +k   Ka iL + ++Y++sLq
  LOC_Os08g42470.1 133 SHSLAERVRRERISERMRMLQALVPGC----DKVTGKALILDEIINYVQSLQ 180
                       8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-17127195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.25E-11127184No hitNo description
Gene3DG3DSA:4.10.280.101.0E-16129193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.542129179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-6133180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-10135185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MADFSPHHSL LLKATAAGAA IATTNDPNIS SFFLYNHSHG SQAPQPANAA AAAIVEDASL  60
ESSVSAVLDT SPSVDRKRKA AEDSAHSKDS CKDGKSRRGK KASKEVEEKS TTEDEPPKGY  120
IHVRARRGQA TDSHSLAERV RRERISERMR MLQALVPGCD KVTGKALILD EIINYVQSLQ  180
NQVEFLSMRI ASMSPVLYGF GMDSDGLHDQ KIGGMFQEAL AMPNPVLNQS SPAPSQAIMD  240
TTSTTSYSLQ SQHGAISFSQ DNGSYLMQAV GEPRQQEMLN QLVFNNMCSF Q*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.892900.0leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasA3BV95
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g42470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g42470
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8305460.0CT830546.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN074O02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649580.10.0transcription factor bHLH137 isoform X1
SwissprotQ93W885e-58BH137_ARATH; Transcription factor bHLH137
TrEMBLA0A0E0IF420.0A0A0E0IF42_ORYNI; Uncharacterized protein
TrEMBLA2YXI40.0A2YXI4_ORYSI; Uncharacterized protein
TrEMBLA3BV950.0A3BV95_ORYSJ; Uncharacterized protein
STRINGONIVA08G24900.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.29e-47bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]