PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os08g42400.1 | ||||||||
Common Name | LOC4346157, Os08g0535800, OsJ_28085, OSJNBa0033D24.25, OSNPB_080535800, P0665C04.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 233aa MW: 24691.2 Da PI: 10.2589 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 95.6 | 7.7e-30 | 19 | 155 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk.atgkdke 91 lppGfrFhPtdeelvv+yL++k+ g +l++ vi+++ +++k++Pwd+p + +++ + yfF+ r ++ +g+r++ +++ g Wk a g+dk+ LOC_Os08g42400.1 19 LPPGFRFHPTDEELVVQYLRRKAFGLPLPA-AVIPDLhNLFKLDPWDIPGA--SSDGDKYFFAVRPPAA-RGRRQHVTASGGCWKpAGGRDKP 107 79****************************.8899998***********43..456789*****99875.68898889999****66678*** PP NAM 92 vlsk...kgelvglkktLvfy........kgrapkgektdWvmheyrl 128 v+++ +++lvg+kk +vf + a + Wvmhey+l LOC_Os08g42400.1 108 VVVArcgGSHLVGVKKGMVFVprqgrkapAAAAAAAGGGCWVMHEYSL 155 99988988999**********8854433222333333667******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.89E-40 | 14 | 179 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 40.176 | 19 | 179 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.9E-20 | 20 | 155 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MERAAAAAPV VVRHGGVVLP PGFRFHPTDE ELVVQYLRRK AFGLPLPAAV IPDLHNLFKL 60 DPWDIPGASS DGDKYFFAVR PPAARGRRQH VTASGGCWKP AGGRDKPVVV ARCGGSHLVG 120 VKKGMVFVPR QGRKAPAAAA AAAGGGCWVM HEYSLALPMH KKGCLAEAEE WVVCRIFQRS 180 SSGSRSPRRP DNDVRRTMPA VAELGRSPSP SSSSSQSSCV TSSSDQEEVS SG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-29 | 19 | 185 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-29 | 19 | 185 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-29 | 19 | 185 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-29 | 19 | 185 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-29 | 19 | 185 | 20 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-29 | 19 | 185 | 20 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-29 | 19 | 185 | 20 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-29 | 19 | 185 | 20 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-29 | 19 | 185 | 20 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-29 | 19 | 185 | 20 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-29 | 19 | 185 | 20 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-29 | 19 | 185 | 20 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-29 | 19 | 185 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-29 | 19 | 185 | 17 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.38351 | 1e-118 | callus| flower| leaf| panicle| root| stem| vegetative meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116631483 | 1e-118 | ||||
Expression Atlas | Q6Z1G9 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os08g42400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os08g42400 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK061543 | 0.0 | AK061543.1 Oryza sativa Japonica Group cDNA clone:006-311-A02, full insert sequence. | |||
GenBank | AK068776 | 0.0 | AK068776.1 Oryza sativa Japonica Group cDNA clone:J013160K11, full insert sequence. | |||
GenBank | AK104766 | 0.0 | AK104766.1 Oryza sativa Japonica Group cDNA clone:001-038-H11, full insert sequence. | |||
GenBank | EU846997 | 0.0 | EU846997.1 Oryza sativa Japonica Group clone KCS078C08 NAC4 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650414.1 | 1e-168 | NAC domain-containing protein 18 | ||||
TrEMBL | Q6Z1G9 | 1e-166 | Q6Z1G9_ORYSJ; NAC4 protein | ||||
STRING | OS08T0535800-02 | 1e-167 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11818 | 31 | 40 | Representative plant | OGRP14562 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 8e-31 | NAC domain containing protein 83 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os08g42400.1 |
Entrez Gene | 4346157 |