PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g41320.1
Common NameLOC4346087, OJ1191_A10.109, Os08g0524800, OSNPB_080524800
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 406aa    MW: 42384 Da    PI: 6.6745
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g41320.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.13.6e-09214261455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR+ri +++  L++l+P +    +k   Ka +L + ++Y++sLq
  LOC_Os08g41320.1 214 SHSLAERVRRERISQRMKVLQDLVPGC----NKVIGKALMLDEIINYVQSLQ 261
                       8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-16208275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.86E-10208265No hitNo description
PROSITE profilePS5088815.301210260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-16210273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-6214261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-10216266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009030anatomycarpel
PO:0007130developmental stagesporophyte reproductive stage
PO:0007606developmental stagegynoecium development stage
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MDGGRVGGDY ISSLLSSSPR LDFGVPVLDA IVAPGGGGGG GDCGLDKLCG DPGFAERAAR  60
LSSFNNGGGG VGQRYGGAGA GLFGMPPPAP GDFAGGGSRE ASSVSDPASS AMKDAAANAK  120
KRKSTAAAAA AAKGKGKEPP VGEEKESDGK RCKTGNGEKE SSVKPKAEQA GSDSSVEDGG  180
GGGQKQGKGK NAKPVEPPKD YVHVRARRGQ ATDSHSLAER VRRERISQRM KVLQDLVPGC  240
NKVIGKALML DEIINYVQSL QRQVEFLSMK LATVNPLDFS NLPTLLQKDM FQACGPSASS  300
VFSLESSNSA FRFAEQGDVF QQFAQNSMES QCTLNQLDLA LSQATNAAQY AFQDGTAGAN  360
LQQRNFWEDD LQSVFHIENG QSQENGVSAP NFHGQQQAGH MKMEF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.108300.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329845000.0
Expression AtlasQ84QW1-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g41320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g41320
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0992910.0AK099291.1 Oryza sativa Japonica Group cDNA clone:J023127C06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648582.10.0transcription factor BHLH094-like
TrEMBLQ84QW10.0Q84QW1_ORYSJ; BHLH transcription factor(GBOF-1)-like
STRINGOS08T0524800-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48560.14e-53bHLH family protein