PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g40030.1
Common NameLOC4346008, Os08g0511200, OSNPB_080511200
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 341aa    MW: 36957.8 Da    PI: 7.2318
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g40030.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.31.2e-52251551128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                       lppGfrFhPtdeelv++yL++kv +  +    v i+evd++++ePw+Lp++++ +ekewyfFs rd+ky+tg r+nrat +gyWkatgkd+ev
  LOC_Os08g40030.1  25 LPPGFRFHPTDEELVTFYLAAKVFNGACCG-GVdIAEVDLNRCEPWELPEAARMGEKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREV 116
                       79*************************888.455***************9888999************************************* PP

               NAM  93 lsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++   +g+l+g+kktLvfykgrap+gekt+Wv+heyrl
  LOC_Os08g40030.1 117 VAAaaaGGALIGMKKTLVFYKGRAPRGEKTKWVLHEYRL 155
                       *998888999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-6314178IPR003441NAC domain
PROSITE profilePS5100559.13525178IPR003441NAC domain
PfamPF023653.8E-2726155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MGDALWEMLG EEMAAAAAAA GEHGLPPGFR FHPTDEELVT FYLAAKVFNG ACCGGVDIAE  60
VDLNRCEPWE LPEAARMGEK EWYFFSLRDR KYPTGLRTNR ATGAGYWKAT GKDREVVAAA  120
AAGGALIGMK KTLVFYKGRA PRGEKTKWVL HEYRLDGDFA AARRSTKEEW VICRIFHKVG  180
DQYSKLMMMK SPASYYLPVS HHHPSSIFHD LPPVPFPNPS LVPFHHDLPT SFHPPLLQHS  240
HANSKNSSSN NGGFVFPNEP NTTNSSDNHI SCNGAMAAAA AAAFPSFSCA STVTGKGGPP  300
AQLGVNAGQQ EPPPPTWMDA YLQHSGFIYE MGPPAVPRGA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-492517817165NO APICAL MERISTEM PROTEIN
1ut4_B4e-492517817165NO APICAL MERISTEM PROTEIN
1ut7_A4e-492517817165NO APICAL MERISTEM PROTEIN
1ut7_B4e-492517817165NO APICAL MERISTEM PROTEIN
3swm_A5e-492217817168NAC domain-containing protein 19
3swm_B5e-492217817168NAC domain-containing protein 19
3swm_C5e-492217817168NAC domain-containing protein 19
3swm_D5e-492217817168NAC domain-containing protein 19
3swp_A5e-492217817168NAC domain-containing protein 19
3swp_B5e-492217817168NAC domain-containing protein 19
3swp_C5e-492217817168NAC domain-containing protein 19
3swp_D5e-492217817168NAC domain-containing protein 19
4dul_A4e-492517817165NAC domain-containing protein 19
4dul_B4e-492517817165NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.992030.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976088290.0
Expression AtlasA0A0P0XHX1-
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed at the globular stage, mostly in the apical part of the embryo. During the triangular stage, confined to the boundary of emerging cotyledons. Later restricted to the center of the apical part of the embryo and to seedling apex, at the boundaries of the cotyledon margins and the boundaries between the SAM and the cotyledons. Localized in a one-cell-wide ring at the boundary between trichomes or lateral roots and epidermis. Accumulates at the boundaries between leaf primordia and the shoot meristem and between floral primordia and the inflorescence meristem. Found in the adaxial axils of secondary inflorescences and pedicels, and in axiallary buds. In flowers, expressed in a ring at the bases of sepals and petals. In carpels, confined to the boundaries between ovule primordia. In ovules, localized in a ring at the boundary between the nucellus and the chalaza. In the mature embryo sac, detected in the two polar nuclei of the central cell. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
UniprotTISSUE SPECIFICITY: In a general manner, present at the boundaries between mersitems and araising primordia. {ECO:0000269|PubMed:12837947}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g40030.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g40030
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0060490.0AP006049.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0016N23.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648828.10.0protein CUP-SHAPED COTYLEDON 3
SwissprotQ9S8517e-86NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A0P0XHX10.0A0A0P0XHX1_ORYSJ; Os08g0511200 protein
TrEMBLQ84YJ10.0Q84YJ1_ORYSJ; Os08g0511200 protein
STRINGOS08T0511200-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112373341
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.19e-82NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]