PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g39390.1
Common NameLOC9271702, OJ1134_H03.1, OJ1506_F01.33, Os08g0504000, OsJ_27857, OSNPB_080504000
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 439aa    MW: 46680.2 Da    PI: 6.3793
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g39390.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84e-05268287120
                       EEETTTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                       ++Cp C k+F+r  n++ H+
  LOC_Os08g39390.1 268 FSCPVCFKTFNRYNNMQMHM 287
                       89*****************9 PP
2zf-C2H212.50.00046354374323
                       ETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                       C +Cgk F  k + ++H +++
  LOC_Os08g39390.1 354 CRKCGKAFAVKGDWRTHEKNC 374
                       *****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.38268290IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.64268295IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.6E-6268287IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280270290IPR007087Zinc finger, C2H2
SuperFamilySSF576673.78E-6336372No hitNo description
Gene3DG3DSA:3.30.160.604.0E-5339372IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035582352372IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.621352372IPR007087Zinc finger, C2H2
SMARTSM00355220378401IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MEDPYTSFFK NPYYYYCTSA SSFPTAPAAA AAAAHLPPPL PPPYAALYPT AGGVGVGVGA  60
HHHHQYPPAA FFHPPPVHQQ HQAPPSPPLR EALPLLSLSP TPARRGGVVD AAADSDSDDD  120
DDGDCCYHHL QDQEGAAAGS TATPAAAAAR APLFADLNCI PTCCGDDNDG GDPMDVEVAG  180
TTADIDAAVA LRIGLPAGGT EADLLSGLTG AGVEHEEEEE DCKVDGGGSG GDDEVVPLGF  240
SSTPIGKLNK GQYWIPTPSQ ILIGPTQFSC PVCFKTFNRY NNMQMHMWGH GSQYRKGPES  300
LRGVQPTAML RLPCYCCAAG CRNNIDHPRA RPLKDFRTLQ THYKRKHGLK PFLCRKCGKA  360
FAVKGDWRTH EKNCGKLWYC LCGSEFKHKR SLKDHARAFG HAHTALDADD DDGAVSDADA  420
VVRPSSSMAA SSLQPPPR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.1016140.0callus
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6ZFH4
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269|PubMed:17600712}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g39390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g39390
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2875660.0AK287566.1 Oryza sativa Japonica Group cDNA, clone: J065027L04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649538.10.0zinc finger protein WIP2
SwissprotQ9SVY11e-113ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLQ6ZFH40.0Q6ZFH4_ORYSJ; Os08g0504000 protein
STRINGOS08T0504000-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-110C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]