PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os08g38210.4 | ||||||||
Common Name | Os08g0490000, OSNPB_080490000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 343aa MW: 37565.2 Da PI: 7.0278 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 56.3 | 5.5e-18 | 57 | 106 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr+llP++ ++K +Ka+ L +++eYI+ Lq LOC_Os08g38210.4 57 RSKHSATEQRRRSKINDRFQLLRDLLPHN----DQKRDKASFLLEVIEYIRFLQ 106 889*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 7.9E-24 | 54 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.939 | 55 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.4E-19 | 55 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.14E-15 | 57 | 110 | No hit | No description |
Pfam | PF00010 | 2.3E-15 | 57 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-13 | 61 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009049 | anatomy | inflorescence | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MDAGSRSSGG AGFDDDDGHA ARREVSSSLK ELTVRVEGKG GSCSGSAGTD QMPNTPRSKH 60 SATEQRRRSK INDRFQLLRD LLPHNDQKRD KASFLLEVIE YIRFLQEKVQ KYEVSYPEWN 120 QENAKVVPWT NIYFRSSWKN AQNKGQVPAD HSPDPPELLK NGSPYMFPFT GNSDNNNAVE 180 TAAASGAQDQ AETDPMSRVS YRSVDTPSPN NVADKVTSQP HAQLVRPSPA ENHTVNCDKL 240 NNSDLAIDEG TISLSSQYSQ ELLNKLNHAL ENSGIDLSQA SISVQINLGK RAMKRSTPAA 300 TSTSKELTDP ASNSQAMGRQ LRLGDGAEEH RQASKRHKSD NS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.5093 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32985392 | 0.0 | ||||
Expression Atlas | A0A0P0XHD5 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os08g38210.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os08g38210 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK100183 | 0.0 | AK100183.1 Oryza sativa Japonica Group cDNA clone:J023030J22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650492.1 | 0.0 | transcription factor BIM2 isoform X2 | ||||
TrEMBL | A0A0P0XHD5 | 0.0 | A0A0P0XHD5_ORYSJ; Os08g0490000 protein (Fragment) | ||||
STRING | OS08T0490000-01 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 2e-60 | BES1-interacting Myc-like protein 2 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os08g38210.4 |