PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g38210.2
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 496aa    MW: 54227.3 Da    PI: 7.8381
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g38210.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.69.3e-18210259255
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r +h++ E+rRR++iN++f+ Lr+llP++    ++K +Ka+ L +++eYI+ Lq
  LOC_Os08g38210.2 210 RSKHSATEQRRRSKINDRFQLLRDLLPHN----DQKRDKASFLLEVIEYIRFLQ 259
                       889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.4E-23207280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-19208283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.939208258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.51E-16210263No hitNo description
PfamPF000103.9E-15210259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-13214264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MHAKLHKKKV IERWIFDGFF FDDAELVIIS VADFFLKTHD FLPQVEKRAD QTPPPPPPPP  60
PHAAVTAEKQ LLHQHALAAA GAFTINHAVA AAATAVKQEP PFAPWCQPVA AVDPRGHQWS  120
LPFAARAVAV ASSRPQQQQQ QPPPPERKGG GGFMDAGSRS SGGAGFDDDD GHAARREVSS  180
SLKELTVRVE GKGGSCSGSA GTDQMPNTPR SKHSATEQRR RSKINDRFQL LRDLLPHNDQ  240
KRDKASFLLE VIEYIRFLQE KVQKYEVSYP EWNQENAKVV PWTNIYFRSS WKNAQNKGQV  300
PADHSPDPPE LLKNGSPYMF PFTGNSDNNN AVETAAASGA QDQAETDPMS RVSYRSVDTP  360
SPNNVADKVT SQPHAQLVRP SPAENHTVNC DKLNNSDLAI DEGTISLSSQ YSQELLNKLN  420
HALENSGIDL SQASISVQIN LGKRAMKRST PAATSTSKEL TDPASNSQAM GRQLRLGDGA  480
EEHRQASKRH KSDNS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.50930.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329853920.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g38210.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g38210
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1001830.0AK100183.1 Oryza sativa Japonica Group cDNA clone:J023030J22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650490.20.0transcription factor BIM2 isoform X1
RefseqXP_015650492.10.0transcription factor BIM2 isoform X2
TrEMBLB9G1I80.0B9G1I8_ORYSJ; Uncharacterized protein
STRINGOS08T0490000-010.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.18e-58BES1-interacting Myc-like protein 2