PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g38210.1
Common NameLOC4345899, Os08g0490000, OSNPB_080490000, P0605H02.26
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 509aa    MW: 55082.9 Da    PI: 7.8352
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g38210.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.69.7e-18223272255
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r +h++ E+rRR++iN++f+ Lr+llP++    ++K +Ka+ L +++eYI+ Lq
  LOC_Os08g38210.1 223 RSKHSATEQRRRSKINDRFQLLRDLLPHN----DQKRDKASFLLEVIEYIRFLQ 272
                       889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.5E-23220293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.939221271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-19221296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-15223272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.64E-16223276No hitNo description
SMARTSM003531.4E-13227277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MGLQGNKATH DFLSLYAAAA TATDYSPLPR HPDSKPSAPA PPPAQDFFLK THDFLPQVEK  60
RADQTPPPPP PPPPHAAVTA EKQLLHQHAL AAAGAFTINH AVAAAATAVK QEPPFAPWCQ  120
PVAAVDPRGH QWSLPFAARA VAVASSRPQQ QQQQPPPPER KGGGGFMDAG SRSSGGAGFD  180
DDDGHAARRE VSSSLKELTV RVEGKGGSCS GSAGTDQMPN TPRSKHSATE QRRRSKINDR  240
FQLLRDLLPH NDQKRDKASF LLEVIEYIRF LQEKVQKYEV SYPEWNQENA KVVPWTNIYF  300
RSSWKNAQNK GQVPADHSPD PPELLKNGSP YMFPFTGNSD NNNAVETAAA SGAQDQAETD  360
PMSRVSYRSV DTPSPNNVAD KVTSQPHAQL VRPSPAENHT VNCDKLNNSD LAIDEGTISL  420
SSQYSQELLN KLNHALENSG IDLSQASISV QINLGKRAMK RSTPAATSTS KELTDPASNS  480
QAMGRQLRLG DGAEEHRQAS KRHKSDNS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.50930.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329853920.0
Expression AtlasQ6ZBQ2-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g38210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g38210
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1001830.0AK100183.1 Oryza sativa Japonica Group cDNA clone:J023030J22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650492.10.0transcription factor BIM2 isoform X2
TrEMBLB8BC110.0B8BC11_ORYSI; Uncharacterized protein
TrEMBLQ6ZBQ20.0Q6ZBQ2_ORYSJ; BHLH protein family-like
STRINGOS08T0490000-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Representative plantOGRP13601747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.17e-58BES1-interacting Myc-like protein 2