PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g38080.1
Common NameLOC4345892, Os08g0487700, OsJ_27735, P0028A08.20
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 366aa    MW: 38422 Da    PI: 6.5145
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g38080.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH292e-09185233355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  LOC_Os08g38080.1 185 NNHSLAERLRREKISERMKLLQDLVPGC----SKVTGKALMLDEIINYVQSLQ 233
                       58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.84E-17179250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.09E-11180237No hitNo description
PROSITE profilePS5088815.459182232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-16184250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-7185233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-10188238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009066anatomyanther
PO:0001004developmental stageanther development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MDANGGNGFG VESNASAVHG GMAMAWQWHG GQMSGGSSCA AAPPPVQQPA MDSLAWSSTV  60
SPSTGAATAA SGAGFLLPPA AVRGGFGSFP VNSGGIVEPA GDCSSESKKR RSDEIAGTDH  120
ANASNALADS GNETECSKDV NGEVIGPPAT AAAGGKSKGK GAKDAGEAQK EGYSHVRARK  180
GQATNNHSLA ERLRREKISE RMKLLQDLVP GCSKVTGKAL MLDEIINYVQ SLQRQVEFLS  240
MKLSAVNPRI DLDIESLVNN SKDVLRFPGQ PSSAPMGFSF STEMMPGLQL SRPGILQGGV  300
HGMINPDVFT SLMQKQQQND KGAFREPQMH QTLDGSFRNT AQMPYPQVMS SEELSIRQDQ  360
DGFHM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.606780.0panicle
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6ZCV8
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g38080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g38080
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0045570.0AP004557.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0028A08.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650276.10.0transcription factor bHLH79
TrEMBLA0A0E0QKH80.0A0A0E0QKH8_ORYRU; Uncharacterized protein
TrEMBLA2YWG50.0A2YWG5_ORYSI; Uncharacterized protein
TrEMBLQ6ZCV80.0Q6ZCV8_ORYSJ; BHLH transcription factor-like
STRINGORUFI08G20920.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29093785
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26260.31e-46cryptochrome-interacting basic-helix-loop-helix 5