PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g37920.1
Common NameLOC4345880, Os08g0485700, OsJ_27725, OSNPB_080485700, P0481F05.12
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 886aa    MW: 94887.6 Da    PI: 7.1972
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g37920.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00065367389123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++Cp C+k+F  +s +  H  +H
  LOC_Os08g37920.1 367 FECPVCNKTFEEQSRYFGHVGSH 389
                       89************999987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098210.023192265IPR001739Methyl-CpG DNA binding
SuperFamilySSF541716.54E-7196247IPR016177DNA-binding domain
Gene3DG3DSA:3.30.890.104.6E-4197246IPR001739Methyl-CpG DNA binding
PfamPF014292.1E-5202245IPR001739Methyl-CpG DNA binding
SMARTSM003550.41318341IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280320341IPR007087Zinc finger, C2H2
PROSITE profilePS501579.328367394IPR007087Zinc finger, C2H2
SMARTSM003550.023367389IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280369389IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 886 aa     Download sequence    Send to blast
METEVFPVVD LRVLSQSDLE ALAAASAHAV APGGSCPDAD QLPPLKIDRA VFNESAGSRK  60
QTFSRVRFGA AAAVAASPSS PSPSAAAKLP RGNDKEDSFI AYHLRRLFAP DDPSSPQIQT  120
LALPAPPSPD PDQLTTNSKG VSVDLVSLSR LADPYDAELG KRTAGMTTEE ELMGFISSLA  180
GQWVSQRMRR KLVDASFFGD HLPSGWRLQL GIKRKDRKAW VNCFSYVSPK GQSFATCQEV  240
SAYLMSLLGY PEFKTDNIEY GSTQQHGLCA DDGVNVLGVQ HQIGTGMDSQ SILPVASITF  300
SSHSRDQDET DADDINSYEC QQCNLTFHGQ SAYAHHLITF HKMGSKRRKI NKVGKFGEPV  360
IGKDGKFECP VCNKTFEEQS RYFGHVGSHA KYHGLTPEAF LQTLSGKVGN DSFAGLSCSL  420
QDLVGSPQLN EKTTASEARS QHHNCSTKHG GNSTRGIDLF NSNCPANFNG HNQTWCRPDE  480
IPPTTDAPST WTYRNNVTNC ADRTVPRTAP QPNDHMDCRV SGFAEATNFN DQAGRHQGFR  540
PSSFGTTNHC QGQIIDHAVA ASKHAEVNNS MKSRDVNLNS RLNTISFPIA TANNETSTAL  600
NDVNRSCITG KGFSGSFSNN DGAASIVLPS SGLNNKIPSS LGVADRSSIA ARSFNAGYVN  660
ENGASEANNI GNKNNTMVYQ TSLAMRPVSP CDLQLGFSGQ KQQILPGYGE LRPAASGSPQ  720
LGGMAANSSI PTRPSQPQFG SMARTDALPT GPSQPGSLAR PNFVPTGFSQ FASRPPTSVP  780
PADSSQFAGG MARQNIPTTS EPTLVLGYTP QMVNGPPAQL GWDLSLSRMV SEGMLPVLCI  840
WCNSQFHHFG PIDAQQSGSF GFICPACKEK MSGNPNAPNN GPWQP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.757090.0callus| flower| leaf| panicle| root| seed| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329791210.0
Expression AtlasQ6ZDS2-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g37920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g37920
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0690970.0AK069097.1 Oryza sativa Japonica Group cDNA clone:J023004M17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650380.10.0uncharacterized protein LOC4345880 isoform X1
TrEMBLQ6ZDS20.0Q6ZDS2_ORYSJ; Os08g0485700 protein
STRINGOS08T0485700-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26871419
Representative plantOGRP203579