PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os08g37904.1 | ||||||||
Common Name | LOC4345879, Os08g0485600, OsJ_27723, OSNPB_080485600, P0419H09.37-1, P0481F05.7-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 730aa MW: 79309.6 Da PI: 7.4633 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14 | 0.00015 | 361 | 383 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+k+F +s + Hi +H LOC_Os08g37904.1 361 FECPVCNKTFEEQSRYFGHIGSH 383 89*****************9777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50982 | 9.693 | 186 | 259 | IPR001739 | Methyl-CpG DNA binding |
SuperFamily | SSF54171 | 1.99E-6 | 190 | 241 | IPR016177 | DNA-binding domain |
Pfam | PF01429 | 7.7E-5 | 196 | 239 | IPR001739 | Methyl-CpG DNA binding |
SMART | SM00355 | 0.41 | 312 | 335 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 314 | 335 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.681 | 361 | 388 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.018 | 361 | 383 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 363 | 383 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009066 | anatomy | anther | ||||
PO:0001004 | developmental stage | anther development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 730 aa Download sequence Send to blast |
METEVFPVVD LRVLTQSDLD ELAAASAHAV DPRSSCPDRA VFNESAGSRK QTFSRVRFVP 60 AAAAAAAAAS ASAAAAAKLP RGNDKEDSFI AYHLRRLFAP DDPSLIENPS FPQTQTLARS 120 PSPDPDQLTT NSRGVSVDLV SLSRLADPYD AELGKRTARM TTEEELMGFI SSLAGQWVNQ 180 RMRRKLVDAS FFGDHLPSGW RLQLGIERKD RKAWVNCFSY VSPKGQSFAT CQEVSAYLMS 240 LLGYPEFKTD NIEYGSTQQH GLCADDGVNV LGVQHQIGTS MDSQSNLPVA SATFYSHSRD 300 QDETVADDIN SYECQQCNLT FHGQSAYAHH LITFHKVSSK RRKSNKVSKF GEPVIGKDGK 360 FECPVCNKTF EEQSRYFGHI GSHAKYQGLT PEAFLQTFSG KVGNNSFAGL SSSLQVLVGS 420 PQLNEKTTAC EARSQHHDCS TKHGGNSTRG IDLFNSNHPA NFNGHNQSWC RSDEIPPTTE 480 AQSTWTYRNN EMNCADRTVP RTVPQPNDHE DCRVSGFAEA TNFNDQAGRH QGFRPFSFGT 540 TNHCQGQIID HAVAASKHAE VNNSMKSRDV NLNSRLNTIS FPIATANNET STALNDVNRS 600 CITGKGFSGS FSNNDGAASI VLPSSGLNNK ISSSLGVADR SSIAARSFNA GYVYENGASE 660 ANNIGNKNNT MVYQTSLAMR PLSPQGKQSS GVASRRTAAV VSERHGGQVV RHPRTASSVY 720 MPEQGPGWL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.80589 | 0.0 | callus| flower| leaf| panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32978261 | 0.0 | ||||
Expression Atlas | Q6YTR7 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os08g37904.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os08g37904 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068243 | 0.0 | AK068243.1 Oryza sativa Japonica Group cDNA clone:J013149G12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650335.1 | 0.0 | uncharacterized protein LOC4345879 isoform X1 | ||||
Refseq | XP_015650336.1 | 0.0 | uncharacterized protein LOC4345879 isoform X1 | ||||
Refseq | XP_015650337.1 | 0.0 | uncharacterized protein LOC4345879 isoform X1 | ||||
TrEMBL | Q6YTR7 | 0.0 | Q6YTR7_ORYSJ; Os08g0485600 protein | ||||
STRING | OS08T0485600-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2687 | 14 | 19 | Representative plant | OGRP2035 | 7 | 9 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os08g37904.1 |
Entrez Gene | 4345879 |