PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g37730.1
Common NameLOC4345867, OJ1111_H02.23, Os08g0483900, OSNPB_080483900, P0419H09.4
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 364aa    MW: 38019.4 Da    PI: 6.2897
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g37730.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.79.9e-14138188154
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       +r++h ++Er+RR+++N+ ++ Lr+l+P +   + ++ + a+i   A++Y+k++
  LOC_Os08g37730.1 138 QRMTHIAVERNRRKQMNEYLAVLRSLMPAS---YVQRGDQASIIGGAINYVKEM 188
                       79****************************...9*****************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.11E-14136193No hitNo description
Gene3DG3DSA:4.10.280.103.2E-14136193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485137188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-17137205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-11138188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-10143194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009030anatomycarpel
PO:0007130developmental stagesporophyte reproductive stage
PO:0007606developmental stagegynoecium development stage
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MALEAVVFSE GYYFGCGGAM AAEAAAGGAW SWSHGYGGGV DQGKGAMELV VDDGVVNAFW  60
DGGGGGASSS PVMAAVSGFI EEPDGGNSSV ADAAPPPEHG GASVVGRDGS AAAPAAAAGR  120
RKRRRARTVK NREEVESQRM THIAVERNRR KQMNEYLAVL RSLMPASYVQ RGDQASIIGG  180
AINYVKEMEQ LLQSLEAHRH ARRARTDAAA ALPFAGFFTF PQYSMSAVPT TTTTTVAAAA  240
TENGNAVAGA GAGDDADADV SGSKPSSVAD IEVTMVESHA NLKVLSRRRP RQLLRMVAGL  300
QHHRLAVLHL NVASAGHMAL YSLSLKVEED CQLTSVDDIA AAVHGIVETI EQEQQQQQKQ  360
SCS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120124RKRRR
2138149RMTHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.551740.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329928350.0
Expression AtlasQ6YTU1-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g37730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g37730
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1076260.0AK107626.1 Oryza sativa Japonica Group cDNA clone:002-131-D10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649413.10.0transcription factor bHLH96
SwissprotQ9C7T41e-71BH096_ARATH; Transcription factor bHLH96
TrEMBLQ6YTU10.0Q6YTU1_ORYSJ; BHLH transcription factor
STRINGOS08T0483900-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.16e-67bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]