PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g37290.1
Common NameLOC4345836, OJ1666_A04.16, Os08g0477900, OSNPB_080477900
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 224aa    MW: 23972.9 Da    PI: 7.7998
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g37290.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.5e-132167354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      r+h+e+Er+RR+riN  +++Lr+l+P+a      +++Ka+ L ++v+++++L
  LOC_Os08g37290.1 21 RSHSEAERKRRQRINAHLATLRTLVPSA-----SRMDKAALLGEVVRHVREL 67
                      58*************************9.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.9291867IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.21E-112168No hitNo description
SuperFamilySSF474591.44E-132176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-112167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-142168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-112473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.3E-4123190No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MVTDGECSAA AVRKGGSPAV RSHSEAERKR RQRINAHLAT LRTLVPSASR MDKAALLGEV  60
VRHVRELRCR ADDATEGADV VVPGEGDEVG VEDEDDDEGE RDEGCYVVGG GDRRWRRRVR  120
AWVCCADRPG LMSDLGRAVR SVSARPVRAE VATVGGRTRS VLELDVVVAS DAADNDRAVA  180
LSALRAALRT VLLNREELLA AAAAAATDGY KRPRFSPRCS SLT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12631ERKRRQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.739880.0callus
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6ZJC8
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g37290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g37290
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039170.0AP003917.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1666_A04.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649548.11e-153transcription factor AIG1
TrEMBLQ6ZJC81e-151Q6ZJC8_ORYSJ; BHLH protein family-like
STRINGOS08T0477900-001e-152(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.12e-14bHLH family protein