PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os08g36920.1 | ||||||||
Common Name | OsJ_27650 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 283aa MW: 30076.3 Da PI: 6.0545 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.7 | 1.9e-20 | 138 | 187 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ r r +lg+f+taeeAa+a+++a+ +++g LOC_Os08g36920.1 138 KYRGVRQRP-WGKWAAEIRDPR----RaVRKWLGTFDTAEEAARAYDRAAVEFRG 187 8********.**********82....48***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.64E-23 | 138 | 196 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.1E-38 | 138 | 201 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.8E-32 | 138 | 195 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-13 | 138 | 187 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.277 | 138 | 195 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-11 | 139 | 150 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.82E-29 | 141 | 195 | No hit | No description |
PRINTS | PR00367 | 1.8E-11 | 161 | 177 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MTNRISAMGG NQEYMIRFDG HIDDASPSSA TAEPPPPLPP PRPFAGRAIS AEREHSVIVA 60 TLLHVISGYR TPPPEVFPAA RAEVCGVCGM DQCLGCEFFA GESGVVSFDG AEKVAAAAAA 120 AAAGAAAGQR RRRKKKNKYR GVRQRPWGKW AAEIRDPRRA VRKWLGTFDT AEEAARAYDR 180 AAVEFRGPRA KLNFPFPEQL SAHDDSNGDA SAAAKSDTLS PSPRSADADE QVEHTRWPQG 240 GGGGGGGGGG ETGDQLWEGL QDLMQLDEGG LSWFPQSSDS WN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-21 | 135 | 196 | 2 | 64 | ATERF1 |
3gcc_A | 8e-21 | 135 | 196 | 2 | 64 | ATERF1 |
5wx9_A | 2e-20 | 138 | 202 | 14 | 79 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 129 | 135 | RRRRKKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.15849 | 0.0 | stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | A3BU22 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os08g36920.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os08g36920 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004399 | 0.0 | AP004399.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0451G12. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649367.1 | 0.0 | ethylene-responsive transcription factor ERF109 | ||||
Swissprot | Q9SZ06 | 5e-31 | EF109_ARATH; Ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | A0A0E0IDA2 | 0.0 | A0A0E0IDA2_ORYNI; Uncharacterized protein | ||||
TrEMBL | A3BU22 | 0.0 | A3BU22_ORYSJ; Uncharacterized protein | ||||
STRING | ONIVA08G19930.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1242 | 36 | 124 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 2e-23 | redox responsive transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os08g36920.1 |
Publications ? help Back to Top | |||
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