PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g36740.1
Common NameOs08g0471401, OsJ_27638, OSNPB_080471401, P0461F06.33
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 247aa    MW: 26290.5 Da    PI: 8.2744
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g36740.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61.1e-08166206954
                       HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  LOC_Os08g36740.1 166 ARMRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 206
                       699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.085157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-14162219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-12162216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-13163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-6166206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.88E-6180211No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:2000012Biological Processregulation of auxin polar transport
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MEFDMLNSNP EAQLELMNTM LQLEQLSAFP DHHGMVVPCS PTSPCMGAQG GHHHFSSVNH  60
QPAHGVVSSG GANTGDGYRD QYYTQLLPAA AYSNAAGGGR GSEYHTTTTT RPASGGGGDG  120
GVGPAAMREM IFHIAALQPV NIDPETVRPP KRRNVRISTD PQSVAARMRR ERISERIRIL  180
QRLVPGGTKM DTASMLDEAI HYVKFLKTQV QSLERAAAAN GHRPPPPTAT SAAAATVAYP  240
GLNGQW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147152RPPKRR
2166171RMRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.510631e-124flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329804821e-124
Expression AtlasQ6Z9R3-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g36740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g36740
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046930.0AP004693.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0461F06.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025875737.10.0transcription factor HEC2
TrEMBLA0A0E0ID870.0A0A0E0ID87_ORYNI; Uncharacterized protein
TrEMBLA0A0E0QK650.0A0A0E0QK65_ORYRU; Uncharacterized protein
TrEMBLA2YW500.0A2YW50_ORYSI; Uncharacterized protein
TrEMBLI1QJF60.0I1QJF6_ORYGL; Uncharacterized protein
TrEMBLQ6Z9R30.0Q6Z9R3_ORYSJ; BHLH protein family-like
STRINGORUFI08G19930.10.0(Oryza rufipogon)
STRINGONIVA08G19790.10.0(Oryza nivara)
STRINGORGLA08G0155700.10.0(Oryza glaberrima)
STRINGORGLA08G0237200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Representative plantOGRP7611568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.13e-41bHLH family protein