PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os08g36450.1 | ||||||||
Common Name | LOC4345794, Os08g0467600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | GeBP | ||||||||
Protein Properties | Length: 455aa MW: 48578.4 Da PI: 10.4511 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 100.1 | 2e-31 | 188 | 287 | 2 | 98 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifel 91 ++ r+w+ +De+++L++li+++ak+g+ +s+d+ ++++++++++s+k+s++ql++K+rrLK+K++ ++ +ksg++p++ +ehd++++el LOC_Os08g36450.1 188 RPPRVWNPQDEVTILRALISYRAKNGAlpGSSQDTGKLHNMIRGQLSVKASTTQLSDKVRRLKHKYNLILTRvTKSGRDPDLPTEHDREVYEL 280 578************************888999*************************************99899****************** PP DUF573 92 skkiWgs 98 skk+Wg+ LOC_Os08g36450.1 281 SKKVWGT 287 *****95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 9.4E-28 | 190 | 286 | IPR007592 | Protein of unknown function DUF573 |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 455 aa Download sequence Send to blast |
MAPKRPAAAS GSASEASDCE AGGAGRRRSP SRSRSPSRSA SPSRSRSKTP PHNAAVLSST 60 PASAAVDFVA ASDSDAGADA DARLASPRRS RERSPRLHSD SDNSAAATAE AAEAAAAAAF 120 DDGDDEGNAT PPPRSRRSSR VEATGVKPIS SRPMDASRRP AAASSQSQRR SKRPRSSPTQ 180 HSPEQHKRPP RVWNPQDEVT ILRALISYRA KNGALPGSSQ DTGKLHNMIR GQLSVKASTT 240 QLSDKVRRLK HKYNLILTRV TKSGRDPDLP TEHDREVYEL SKKVWGTKSG GAGAGSGGGG 300 GGGGGRVYEN AEVVQSDEEQ GSRDDSDEDM ESGWDDRDHR NRRLKAIVVA NGNGNAVTGG 360 RSVHGNGSGK GDVADKGKDM YPYLWEAVEE LSKEHPSGTA FRKAFGVLDG SRARAMEEKL 420 NRFRLSEIRQ QLRRMDLMKE TIKMVLDALE GSDL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.80526 | 0.0 | callus| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q0J546 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os08g36450.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os08g36450 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004585 | 0.0 | AP004585.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0470B03. | |||
GenBank | AP006461 | 0.0 | AP006461.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0104B02. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648426.1 | 0.0 | STOREKEEPER protein | ||||
TrEMBL | Q0J546 | 0.0 | Q0J546_ORYSJ; Os08g0467600 protein | ||||
STRING | OS08T0467600-00 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2671 | 35 | 87 | Representative plant | OGRP10713 | 4 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00390.1 | 1e-14 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os08g36450.1 |
Entrez Gene | 4345794 |