PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os08g35240.1 | ||||||||
Common Name | LOC107275353, Os08g0454000, OSNPB_080454000, P0048G02.8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 244aa MW: 25966.6 Da PI: 4.5395 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54 | 4.2e-17 | 26 | 75 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr +k +grWv+eIr p++ r r++lg++ +ae+Aa+a +aa+ +l+g LOC_Os08g35240.1 26 RYKGVRLRK-WGRWVSEIRMPNS---RERIWLGSYESAEKAARAFDAAAVCLRG 75 7******99.**********933...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.77E-18 | 26 | 86 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.5E-31 | 26 | 91 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-26 | 26 | 87 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.24E-17 | 26 | 87 | No hit | No description |
Pfam | PF00847 | 3.0E-10 | 26 | 75 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.97 | 26 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-8 | 27 | 38 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-8 | 49 | 65 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MDHIGISGGG EGGVVSPAQP SSPERRYKGV RLRKWGRWVS EIRMPNSRER IWLGSYESAE 60 KAARAFDAAA VCLRGSRGAG SLNFPESPPP DVRRRFPGAA LTVEQIQAEA ARHANRPFPA 120 NTAAAGGSSS SYSISQRQEA AAPARSTSND DTAMSSVPST DGGAADYDGG DDVIDWSFMD 180 TLPAMSSSAA STNADLVPAM DDFMYGFLHT MPPSPCEDGG EDVMIDGNCN MDQTFFSVDL 240 WRF* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q6ZAG1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os08g35240.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os08g35240 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004662 | 0.0 | AP004662.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0048G02. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649307.1 | 1e-178 | ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | A0A0E0QJU5 | 1e-177 | A0A0E0QJU5_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q6ZAG1 | 1e-177 | Q6ZAG1_ORYSJ; AP2 domain transcription factor-like | ||||
STRING | ORUFI08G18850.1 | 1e-178 | (Oryza rufipogon) | ||||
STRING | OS08T0454000-00 | 1e-178 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP861 | 32 | 144 | Representative plant | OGRP14547 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 1e-25 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os08g35240.1 |
Entrez Gene | 107275353 |