PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g34360.1
Common NameP0708B04.6
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 289aa    MW: 30967.9 Da    PI: 4.4309
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g34360.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.81.7e-152576155
               AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      s+y+GV +++ +g+W+A+I   +   g +k+ +lg++ t eeAa a++ a+ + +g
  LOC_Os08g34360.1 25 SKYRGVARHHHNGKWEARIGRvF---G-NKYLYLGTYATQEEAAVAYDIAAIEHRG 76
                      89****99**********99966...3.6**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.44E-172586IPR016177DNA-binding domain
CDDcd000189.11E-242586No hitNo description
PfamPF008473.9E-102575IPR001471AP2/ERF domain
PROSITE profilePS5103217.7282684IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-172684IPR001471AP2/ERF domain
SMARTSM003803.8E-252690IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MEGQSREEYI GSLRRKSSGF SRGVSKYRGV ARHHHNGKWE ARIGRVFGNK YLYLGTYATQ  60
EEAAVAYDIA AIEHRGLNAV TNFDINLYIR WYHGSCRSSS AAAATTIEDD DFAEAIAAAL  120
QGVDEQPSSS PATTRQLQTA DDDDDDLVAQ LPPQLRPLAR AASTSPIGLL LRSPKFKEII  180
EQAAAAAASS SGSSSSSSTD SPSSSSSSSL SPSPLPSPPP QQQPTVPKDD QYNVDMSSVA  240
AARCSFPDDV QTYFGLDDDG FGYPEVDTFL FGDLGAYAAP MFQFELDV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.547860.0flower| leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329919780.0
Expression AtlasQ6Z8R9-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g34360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g34360
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1067690.0AK106769.1 Oryza sativa Japonica Group cDNA clone:002-115-F07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651011.10.0AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLA0A0E0QJM00.0A0A0E0QJM0_ORYRU; Uncharacterized protein
TrEMBLQ6Z8R90.0Q6Z8R9_ORYSJ; AP2/EREBP transcription factor-like protein
STRINGORUFI08G18170.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.23e-46AP2 family protein