PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g34010.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ZF-HD
Protein Properties Length: 333aa    MW: 34788.4 Da    PI: 6.5034
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g34010.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer105.14.4e-333692358
       ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58
                      +++Y+eClkNhAaslGghavDGCgEfmps+ ++ +++a+lkCaACgCHRnFHRr +e
  LOC_Os08g34010.1 36 AAVYRECLKNHAASLGGHAVDGCGEFMPSPAADaADPASLKCAACGCHRNFHRRLPE 92
                      679***************************99999******************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257749.0E-21789IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047705.3E-283890IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.4183990IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.9E-303989IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF1014472.62E-6106114No hitNo description
SuperFamilySSF466896.72E-10230292IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-19235292IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEAVVGVKYR PVVFPNGGAA AAAAGKSKAT PASATAAVYR ECLKNHAASL GGHAVDGCGE  60
FMPSPAADAA DPASLKCAAC GCHRNFHRRL PEAPPSPPLL ALPPPPPPPP PPPPPPQPQQ  120
HLPRTAAVAV APQLLLHGSH QRREQSPETD RVRGPGHHHD DDAAADDDDS EDSEMSDYDD  180
DRSASPLQAP PPVLSPGYLP SATHMLLSLG SASAPAVAAS RPHAAAAAMG PPPPPGAATS  240
ASRKRFRTKF SPEQKQRMQA LSERLGWRLQ KRDEAVVDEC CREIGVGKGV FKGQLVLPLS  300
TVITSFVLEL IWVCMDNDDD DVLIGVLGGV VF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.741680.0leaf| panicle| root
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g34010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g34010
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0047020.0AP004702.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0524F03.
GenBankAP0051590.0AP005159.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0016C11.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648556.10.0zinc-finger homeodomain protein 10 isoform X1
RefseqXP_025875847.10.0zinc-finger homeodomain protein 10 isoform X2
SwissprotQ6Z5280.0ZHD10_ORYSJ; Zinc-finger homeodomain protein 10
TrEMBLA0A0P0XGE20.0A0A0P0XGE2_ORYSJ; Os08g0438400 protein
STRINGOS08T0438400-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36463374
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.11e-19zinc finger homeodomain 1