PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os08g33910.1 | ||||||||
Common Name | LOC4345668, Os08g0436700, OsJ_27451, OSJNBa0016C11.11, OSNPB_080436700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 386aa MW: 43336.7 Da PI: 8.2696 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.8 | 1.8e-52 | 16 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 l pGfrFhPtdeelv++yLk+k+++k++++ e i+++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t++g+Wkatg+d++++ LOC_Os08g33910.1 16 LLPGFRFHPTDEELVSFYLKRKIQQKPISI-ELIRQLDIYKFDPWDLPKLASTGEKEWYFYCPRDRKYRNSVRPNRVTTAGFWKATGTDRPIY 107 579***************************.89***************9888999************************************** PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 s+ +++ +glkk+Lvfykgra +g ktdW+mhe+rl LOC_Os08g33910.1 108 STeGTKCIGLKKSLVFYKGRAARGIKTDWMMHEFRL 143 *956667***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-57 | 15 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.83 | 16 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.7E-26 | 18 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045770 | Biological Process | positive regulation of asymmetric cell division | ||||
GO:0048103 | Biological Process | somatic stem cell division | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MEERNDVNMD KSDEILLPGF RFHPTDEELV SFYLKRKIQQ KPISIELIRQ LDIYKFDPWD 60 LPKLASTGEK EWYFYCPRDR KYRNSVRPNR VTTAGFWKAT GTDRPIYSTE GTKCIGLKKS 120 LVFYKGRAAR GIKTDWMMHE FRLPTLTDPS LPKKPIDKNI PLNDSWTICR IFKKTSSMAQ 180 RALCQTWGAQ LPGTIDPDIF STLQSVQASQ FALESSSCSL QAAATAAHQI TSKYALQGNN 240 NNQQQQQQHK PSNPLDGSSC KVINFNCSQS AEVQNSQIIL PFEAHTSQKT ATPLLFDTQF 300 GQPDQISRFV VDSSVNANGG GISNKSQDPS ARKPGSGFSM NSDWDGVARI NFPFDLGADS 360 SEDWRSSIPW ESFLSPTTVH AEMPN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-53 | 16 | 177 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-53 | 16 | 177 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-53 | 16 | 177 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-53 | 16 | 177 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-53 | 16 | 177 | 17 | 168 | NAC domain-containing protein 19 |
4dul_B | 3e-53 | 16 | 177 | 17 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.53506 | 0.0 | callus |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32983036 | 0.0 | ||||
Expression Atlas | Q6Z538 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First expressed at globular stage onward in the COL progenitors after the first division of the hypophyseal cell. Later observed in these cells and their descendants, mostly in direct daughter cells. Also detected in the Epi/LRC stem cells and daughters, and is retained in maturing LRC layers. Present in elongated stem cells that are about to divide. {ECO:0000269|PubMed:19081078}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in root cap stem cells and their immediate daughters. {ECO:0000269|PubMed:19081078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os08g33910.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os08g33910 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK073013 | 0.0 | AK073013.1 Oryza sativa Japonica Group cDNA clone:J033000B16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649454.1 | 0.0 | protein FEZ | ||||
Swissprot | Q9ZVH0 | 2e-97 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | Q6Z538 | 0.0 | Q6Z538_ORYSJ; Os08g0436700 protein | ||||
STRING | OS08T0436700-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3366 | 38 | 82 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26870.1 | 1e-99 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os08g33910.1 |
Entrez Gene | 4345668 |
Publications ? help Back to Top | |||
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