PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os08g33750.1 | ||||||||
Common Name | Os08g0434700, OSNPB_080434700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | G2-like | ||||||||
Protein Properties | Length: 297aa MW: 31991.9 Da PI: 6.1354 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 95.2 | 5.2e-30 | 21 | 74 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +rlrWt +LHerFv av++LGG+++AtPk++l++m v+gLtl+h+kSHLQkYR LOC_Os08g33750.1 21 ARLRWTGQLHERFVLAVAELGGADRATPKSVLRAMAVPGLTLYHLKSHLQKYRQ 74 7****************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.88E-15 | 19 | 76 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-29 | 19 | 78 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-21 | 21 | 74 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.3E-5 | 22 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 3.5E-14 | 138 | 178 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MSSQQQHAGE APASAAAAAR ARLRWTGQLH ERFVLAVAEL GGADRATPKS VLRAMAVPGL 60 TLYHLKSHLQ KYRQAVSRGG NGGGGGSGSL NDRSSSSERQ PADHDGDSAA DEPRTIAYDG 120 DSDGDAKEGL RDSSRSMVQM QREVQRKLQE QIEVKRHLQL RMEAQGRYLQ SVLRRAQQVL 180 ADHSLASSPE AATAELSELA SAVDIECMSS SSPPRHHRQS AATDSCVTTT SSSEAESKAA 240 GSKRLHTSDC TVEQPVQGKR AFNFLQRHNQ ADQEEEQEEE YAGAEDGSSS EIDLNR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-18 | 19 | 78 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-18 | 19 | 78 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-18 | 20 | 75 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-18 | 20 | 75 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-18 | 20 | 75 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-18 | 20 | 75 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-18 | 19 | 78 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-18 | 19 | 78 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-18 | 19 | 78 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-18 | 19 | 78 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-18 | 19 | 78 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-18 | 19 | 78 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.49123 | 0.0 | callus| flower| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32980362 | 0.0 | ||||
Expression Atlas | Q0J5H1 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os08g33750.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os08g33750 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK070338 | 0.0 | AK070338.1 Oryza sativa Japonica Group cDNA clone:J023049D17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650853.1 | 0.0 | myb-related protein 2 | ||||
TrEMBL | Q0J5H1 | 0.0 | Q0J5H1_ORYSJ; Os08g0434700 protein (Fragment) | ||||
TrEMBL | Q6YWK6 | 0.0 | Q6YWK6_ORYSJ; Putative transfactor | ||||
STRING | OS08T0434700-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11264 | 30 | 38 | Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79430.2 | 8e-42 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os08g33750.1 |