PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os08g33270.1

Common Name

P0479C08.125

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

FAR1

Protein Properties

Length: 1137aa MW: 131867 Da PI: 7.3166

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os08g33270.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	40.7	7.7e-13	393	442	1	47
FAR1 1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk 47 +f+n+YA +GFs+++++++++ krnge+t+ tf+C+++gk+++++k+ LOC_Os08g33270.1 393 EFFNFYALLAGFSIVRAHNYHTtskKRNGEVTRVTFRCNRQGKPTSQSKS 442 6*****************998999*****************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.0E-11	393	442	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-34	582	676	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.262	867	903	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.4E-4	871	903	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.9E-4	878	905	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1137 aa Download sequence Send to blast
MELGEEKEER KRGSKSQMEG ESTMSESKSS SRGKKKSKTT FEQKVEIHTK ETQNLENTKK 60 KQEEGKIKRN KKAPVQGVIQ KDKECKSSKE IEGKNIGGIQ KEKQSKSSME IEEKESDIKK 120 HFKALTEMDT EIISQSNLTE INTAMLSSGI TIELSEGERS IQSKQIQNMK QSILTEYKTT 180 FVNSGIIGNE VGRSNALDEP NTDHIGLGAE DATVEKQSMD NSASMTEAFV DYSNKYSYDE 240 LSLFGSMNSV ANMSYTSLME QIISSQPTIS DMQEQNSAHS IFVASPSAFQ EDESNEEDAM 300 DNWNLDIFNL LDGEKEPSSM DNHRCTSVQG TRDDDNNPND NSETNQQELI EEDINIFVEN 360 EQEEATKGNN AAIDSRYIPR VGTQFKNITE AHEFFNFYAL LAGFSIVRAH NYHTTSKKRN 420 GEVTRVTFRC NRQGKPTSQS KSRNEIWNIS RVQLDHNHQL SPRDEVRFLK SHKHMTTEEK 480 MLIRTLKECN IPTRHMIVIL SVLRGGLTSL PYTKKDISNV RTTINKETSS NDIMKTLEFF 540 RRKKEKDPHF FYEFDLDESK KVKNLFWTDG RSREWYEKYG DVVSFDTTYF TNKYNLPFAP 600 FVGIYGHGNT IVFGCAFLHD ETSETFKWLF RTFLKAMSQK EPKTIITDQD GAMRSAIAQV 660 FQNAKHRNCF FHIVKKAFNL SGNLLKAKEG LYDEYEDIIN NSVTEEEFEY LWQEMIDSFE 720 VQHINFLKHM WSIRKRFIPV YFKGDFCPFI KSTALSEGTN SRFKNNVGPQ YSITNFMIEY 780 ERVMDTIQNL EQFDDHISRT KKPSKLWSHY YIEYQAMRMY NRKIFIKFQV ELKRTTRFQI 840 NEVEKFKTYE VFLALNQNIQ VIRRRKYLVI VDLEKEDFNC ICSKFEKDGL LCCHVLKVML 900 HLNAMKIPEK YIIERWTKKE YKGLEGKGNG NIPLAQSSIL RFNILSRKSA EIASNGSKSY 960 ETFQFVVEEM DKIAKQLELL CSNKDAEQEI NDSDPNAEDN LNSHEKGNQQ SEENIDEILL 1020 DLDIAKSKGR PTQRYKTIRE EIQQKELYHC SHCQRTDHTF PTCPLKHVEF DLPRKKRRKV 1080 KNTREQDGVE QKKKDVSNKR KDLQQDISQE KHNSGAELEG KKKRNSSSSK RGGTKE*

Sequence ? help Back to Top

Protein Sequence Length: 1137 aa Download sequence Send to blast

MELGEEKEER KRGSKSQMEG ESTMSESKSS SRGKKKSKTT FEQKVEIHTK ETQNLENTKK  60
KQEEGKIKRN KKAPVQGVIQ KDKECKSSKE IEGKNIGGIQ KEKQSKSSME IEEKESDIKK  120
HFKALTEMDT EIISQSNLTE INTAMLSSGI TIELSEGERS IQSKQIQNMK QSILTEYKTT  180
FVNSGIIGNE VGRSNALDEP NTDHIGLGAE DATVEKQSMD NSASMTEAFV DYSNKYSYDE  240
LSLFGSMNSV ANMSYTSLME QIISSQPTIS DMQEQNSAHS IFVASPSAFQ EDESNEEDAM  300
DNWNLDIFNL LDGEKEPSSM DNHRCTSVQG TRDDDNNPND NSETNQQELI EEDINIFVEN  360
EQEEATKGNN AAIDSRYIPR VGTQFKNITE AHEFFNFYAL LAGFSIVRAH NYHTTSKKRN  420
GEVTRVTFRC NRQGKPTSQS KSRNEIWNIS RVQLDHNHQL SPRDEVRFLK SHKHMTTEEK  480
MLIRTLKECN IPTRHMIVIL SVLRGGLTSL PYTKKDISNV RTTINKETSS NDIMKTLEFF  540
RRKKEKDPHF FYEFDLDESK KVKNLFWTDG RSREWYEKYG DVVSFDTTYF TNKYNLPFAP  600
FVGIYGHGNT IVFGCAFLHD ETSETFKWLF RTFLKAMSQK EPKTIITDQD GAMRSAIAQV  660
FQNAKHRNCF FHIVKKAFNL SGNLLKAKEG LYDEYEDIIN NSVTEEEFEY LWQEMIDSFE  720
VQHINFLKHM WSIRKRFIPV YFKGDFCPFI KSTALSEGTN SRFKNNVGPQ YSITNFMIEY  780
ERVMDTIQNL EQFDDHISRT KKPSKLWSHY YIEYQAMRMY NRKIFIKFQV ELKRTTRFQI  840
NEVEKFKTYE VFLALNQNIQ VIRRRKYLVI VDLEKEDFNC ICSKFEKDGL LCCHVLKVML  900
HLNAMKIPEK YIIERWTKKE YKGLEGKGNG NIPLAQSSIL RFNILSRKSA EIASNGSKSY  960
ETFQFVVEEM DKIAKQLELL CSNKDAEQEI NDSDPNAEDN LNSHEKGNQQ SEENIDEILL  1020
DLDIAKSKGR PTQRYKTIRE EIQQKELYHC SHCQRTDHTF PTCPLKHVEF DLPRKKRRKV  1080
KNTREQDGVE QKKKDVSNKR KDLQQDISQE KHNSGAELEG KKKRNSSSSK RGGTKE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	540	545	RRKKEK
2	1074	1078	KKRRK

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	Q8H3L3

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os08g33270.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os08g33270

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004617	0.0	AP004617.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0479C08.
GenBank	AP014964	0.0	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025881725.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	Q8H3L3	0.0	Q8H3L3_ORYSJ; Putative far-red impaired response protein
STRING	OB09G10870.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-88	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	LOC_Os08g33270.1