PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os08g32990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | HB-other | ||||||||
Protein Properties | Length: 249aa MW: 27894.7 Da PI: 4.0627 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 15.5 | 3e-05 | 133 | 171 | 11 | 45 |
HHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHH CS Homeobox 11 qleeLeelFeknrypsaeereeLAkkl....gLterqVk 45 ++e+Le+++ +++p+ ++r++L ++ +++ +q+k LOC_Os08g32990.1 133 EVEALERVYTDCPKPTSARRQQLLCECpilaNIEPKQIK 171 6799***********************999999999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.90.940.10 | 1.2E-24 | 60 | 134 | IPR012293 | RNA polymerase subunit, RPB6/omega |
SuperFamily | SSF63562 | 3.14E-21 | 61 | 138 | IPR006110 | RNA polymerase, subunit omega/K/RPB6 |
Pfam | PF01192 | 1.0E-8 | 95 | 131 | IPR006110 | RNA polymerase, subunit omega/K/RPB6 |
PROSITE pattern | PS01111 | 0 | 100 | 114 | IPR020708 | DNA-directed RNA polymerase, 14-18kDa subunit, conserved site |
CDD | cd00086 | 0.0024 | 131 | 171 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.0E-4 | 135 | 171 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003899 | Molecular Function | DNA-directed RNA polymerase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MAEDDYNDMD MGCCQVCQQS GFIQNVRNYA DFWVTRYEDE PPEPEIEEEL CGLFTFSELE 60 GAEEEPENNN EDAVDDVVGA EDDREQEKTA RPWKTSKYMT KYERARILST RALQISMNAP 120 VMVELEGGTY PLEVEALERV YTDCPKPTSA RRQQLLCECP ILANIEPKQI KFSLFSVTKT 180 LVMAVLGTQV AAHHNGHGTS HENHTQESES SVEQHDPESQ DDISIKATPA DESPPEETSA 240 APTKEQVT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3h0g_F | 2e-13 | 95 | 145 | 71 | 121 | DNA-directed RNA polymerases I, II, and III subunit RPABC2 |
3h0g_R | 2e-13 | 95 | 145 | 71 | 121 | DNA-directed RNA polymerases I, II, and III subunit RPABC2 |
5u0s_f | 2e-13 | 95 | 145 | 71 | 121 | RNA polymerase II subunit Rpb6 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.6899 | 4e-70 | callus| flower| leaf| panicle| root| seed| stem| vegetative meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32988135 | 4e-70 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os08g32990.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os08g32990 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004463 | 1e-112 | AP004463.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0456B03. | |||
GenBank | AP014964 | 1e-112 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006657672.1 | 5e-34 | PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 6A-like | ||||
TrEMBL | A0A0E0QJ83 | 0.0 | A0A0E0QJ83_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI08G17160.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP23751 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 9e-17 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os08g32990.1 |