PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os08g32440.1 | ||||||||
Common Name | OsJ_27341 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | FAR1 | ||||||||
Protein Properties | Length: 457aa MW: 52466.2 Da PI: 8.266 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 65.9 | 1e-20 | 24 | 110 | 2 | 89 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 f+ +Y+ ++GF+vrk+ ++ sk++g++t+ ++vC +eg+r++++++ + +r ra trt+Cka++++++++ g++ev+++ leHnH+l LOC_Os08g32440.1 24 FWVAYGGRTGFDVRKRCTNVSKMDGKVTSCRYVCFNEGHRTKRQTE-HVTRCFRADTRTDCKAQMVISLDRgAGNYEVIDV-LEHNHPL 110 99*****************************************999.9999********************9*******97.89***99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.6E-16 | 24 | 110 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 457 aa Download sequence Send to blast |
MAEVDTKLLE VGLRFKNPYK GWLFWVAYGG RTGFDVRKRC TNVSKMDGKV TSCRYVCFNE 60 GHRTKRQTEH VTRCFRADTR TDCKAQMVIS LDRGAGNYEV IDVLEHNHPL HLPETFHLMK 120 SQRKISKLQA FEIETADDSS IRPKAAHELA TRQVGGPLNL SYSCRDRQNY LQSRRQRELA 180 FGQNAVKHLS PVKGKEDDEG EEEDEGEEES HVRFLGVRST QLSESFNNAL KNHLKSDFDI 240 IRFLKHFERS VQDKRDKELQ SEFEARKKLP RRLMCTPMLV RANQVYTPVI FEAFQSEYER 300 SMAACARVLD GEHRYAVVVG NLLGELEEKL NLLSAGGTHE PYEDKENIDP NAQHGDDLLS 360 ATQLNKKEVQ SNKSRRIRTW IDKLRKGKRN NPKSAKPTKK GVKKNDALQP QVQVKDDGSH 420 KERDVELQQY NIISDFTHLV TAPSCDDDIL CDQDLF* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | A3BT73 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os08g32440.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os08g32440 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012616 | 0.0 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015688484.1 | 1e-114 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A3BT73 | 0.0 | A3BT73_ORYSJ; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-13 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os08g32440.1 |