PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os08g31580.1 | ||||||||
Common Name | LOC4345541, Os08g0408500, OsJ_27264, OSNPB_080408500, P0042B03.7, P0453D01.40 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 281aa MW: 29524.9 Da PI: 7.7621 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.4 | 9.7e-20 | 103 | 152 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa +++a+ +l+g LOC_Os08g31580.1 103 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALTYDQAAYRLRG 152 59******9.**********955...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.01E-29 | 102 | 162 | No hit | No description |
PROSITE profile | PS51032 | 23.024 | 103 | 160 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.0E-34 | 103 | 166 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.05E-22 | 103 | 162 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.7E-32 | 103 | 162 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-10 | 104 | 115 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.5E-14 | 104 | 152 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-10 | 126 | 142 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage | ||||
PO:0007606 | developmental stage | gynoecium development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MAAAIEGNLM RALGEAPSPQ MQKIAPPPFH PGLPPAPANF SSAGVHGFHY MGPAQLSPAQ 60 IQRVQAQLHM QRQAQSGLGP RAQPMKPASA AAPAAAAARA QKLYRGVRQR HWGKWVAEIR 120 LPRNRTRLWL GTFDTAEEAA LTYDQAAYRL RGDAARLNFP DNAASRGPLD AAVDAKLQAI 180 CDTIAASKNA SSRSRGGAGR AMPINAPLVA AASSSSGSDH SGGGDDGGSE TSSSSAAASP 240 LAEMEQLDFS EVPWDEAEGF ALTKYPSYEI DWDSLLNNNN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-19 | 102 | 160 | 4 | 63 | ATERF1 |
3gcc_A | 2e-19 | 102 | 160 | 4 | 63 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.5599 | 0.0 | callus| flower| leaf| panicle| root| stem| vegetative meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 284431803 | 0.0 | ||||
Expression Atlas | Q6Z9V4 | - |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os08g31580.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os08g31580 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK105725 | 0.0 | AK105725.1 Oryza sativa Japonica Group cDNA clone:001-201-G08, full insert sequence. | |||
GenBank | AP004658 | 0.0 | AP004658.4 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0042B03. | |||
GenBank | AP004691 | 0.0 | AP004691.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0453D01. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | FJ940221 | 0.0 | FJ940221.1 Oryza sativa Japonica Group clone KCS046C03 AP domain DRE binding factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650910.1 | 0.0 | ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A0E0QIV2 | 0.0 | A0A0E0QIV2_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q6Z9V4 | 0.0 | Q6Z9V4_ORYSJ; AP domain DRE binding factor | ||||
STRING | ORUFI08G16150.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS08T0408500-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP382 | 35 | 203 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 1e-51 | related to AP2 4 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os08g31580.1 |
Entrez Gene | 4345541 |
Publications ? help Back to Top | |||
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