PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g29660.1
Common NameLOC4345456, Os08g0386200, OsJ_27157, OSNPB_080386200, P0434E03.6
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 320aa    MW: 33550.3 Da    PI: 6.6611
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g29660.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.13.1e-27130190259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                       dDg++WrKYGqK++ g+++pr+YYrCt++   gC+++k+v+r+++d ++++++Y+geH+++
  LOC_Os08g29660.1 130 DDGHSWRKYGQKDILGAKHPRGYYRCTHRntqGCTATKQVQRTDDDASLFDVVYHGEHTCR 190
                       8***************************98889**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-28124190IPR003657WRKY domain
PROSITE profilePS5081122.079124187IPR003657WRKY domain
SuperFamilySSF1182905.75E-25128190IPR003657WRKY domain
SMARTSM007741.1E-39129191IPR003657WRKY domain
PfamPF031061.1E-26130190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEGVVDGSGA QLVVAELVRV QGLLRQLEAH LSAPCSVELC RGLVAQIVAL TDRSIGIATR  60
SFSSASGGGA HFADTAPPMP ALTSCTPSPL SDGSDHQPFR TTNAKKRKTT ARWTSQVRVS  120
AAGGAEGPAD DGHSWRKYGQ KDILGAKHPR GYYRCTHRNT QGCTATKQVQ RTDDDASLFD  180
VVYHGEHTCR PGAASAAAAK RPHAQTLLQS LSASLTVNTD TNTPLTPENR APAPPLQQQQ  240
QQQSVSASPV ASDSYGLGGA GYGDWRCCDG DLQEVVSALA TVTSAPDHAA MDAADFMSYC  300
FDFDPAVYGG IVGTPSFFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-22130190969OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.119450.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379882690.0
Expression AtlasQ6ZA22-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g29660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g29660
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1116060.0AK111606.1 Oryza sativa Japonica Group cDNA clone:J013102P22, full insert sequence.
GenBankAY6769310.0AY676931.1 Oryza sativa (indica cultivar-group) transcription factor WRKY69 (WRKY69) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651040.10.0probable WRKY transcription factor 54
TrEMBLA0A0E0QIF70.0A0A0E0QIF7_ORYRU; Uncharacterized protein
TrEMBLQ6B6Q80.0Q6B6Q8_ORYSI; Transcription factor WRKY69
TrEMBLQ6ZA220.0Q6ZA22_ORYSJ; Os08g0386200 protein
STRINGORUFI08G15010.10.0(Oryza rufipogon)
STRINGOS08T0386200-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.14e-26WRKY family protein