PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g28214.6
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family CPP
Protein Properties Length: 371aa    MW: 40574.9 Da    PI: 7.9689
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g28214.6genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR48.22.2e-152464141
               TCR  1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41
                      k++kgC+Ck+++ClkkYCeCf+a ++Cse+C+C++CkN ++
  LOC_Os08g28214.6 24 KHTKGCKCKRTECLKKYCECFKASVFCSENCRCTGCKNYKS 64
                      589***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163419.568164IPR005172CRC domain
SMARTSM011147.4E-162465IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.3E-122762IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MPKVLNSTAH NCESKAAEGD IVGKHTKGCK CKRTECLKKY CECFKASVFC SENCRCTGCK  60
NYKSNADRIS QKNTVHAHHV QNPASSGMVG QSVIIFHAAE NDSSLSLAAS VSDHSINNNT  120
SHALSCSLTS SVTREDAKSL VKYVPHEVTY RPSLADIIQI EDVNELCNLL ILVSRQAGAT  180
LLESGMKENT KRKKLNRVDS CLSSTNHDRE AIQKEPAKQM CSLEKSSNEV LIAEGRLELP  240
RADPFDIQKG NKRPLSPGTQ ALMCDEQDAV FQDSKAPDAT PSTTEENLVD IFKEQEKRVL  300
TNFRDYLCKL ATCGKLQELK LSLASTNCSE QAFADHGNNS SITRVAKVTR IRQTIPQFSS  360
KAASTTALDV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-11146873127Protein lin-54 homolog
5fd3_B1e-11146873127Protein lin-54 homolog
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.611980.0panicle
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g28214.6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g28214
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0052980.0AP005298.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1770_H03.
GenBankAP0053890.0AP005389.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0091C18.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650564.10.0protein tesmin/TSO1-like CXC 6 isoform X2
TrEMBLA0A0E0AUQ10.0A0A0E0AUQ1_9ORYZ; Uncharacterized protein
TrEMBLI1QI480.0I1QI48_ORYGL; Uncharacterized protein
STRINGOGLUM08G13570.10.0(Oryza glumipatula)
STRINGORGLA08G0109900.10.0(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20110.27e-42Tesmin/TSO1-like CXC domain-containing protein