PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g28214.3
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family CPP
Protein Properties Length: 451aa    MW: 49654.2 Da    PI: 8.024
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g28214.3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR37.44.9e-122361342
               TCR  3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42
                      k +C+Ck skClk+YCeCf++g++C   C+C++C+N+ ++
  LOC_Os08g28214.3 23 KTNCSCKYSKCLKLYCECFEKGRYCIG-CNCTNCCNNVNH 61
                      789************************.********9875 PP
2TCR47.82.8e-15104144141
               TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                       k++kgC+Ck+++ClkkYCeCf+a ++Cse+C+C++CkN ++
  LOC_Os08g28214.3 104 KHTKGCKCKRTECLKKYCECFKASVFCSENCRCTGCKNYKS 144
                       589***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.4E-72161IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163433.40122144IPR005172CRC domain
PfamPF036383.5E-82458IPR005172CRC domain
SMARTSM011147.4E-16104145IPR033467Tesmin/TSO1-like CXC domain
PfamPF036389.4E-12107142IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MLSSQKPSSE MWSETKDVTL TRKTNCSCKY SKCLKLYCEC FEKGRYCIGC NCTNCCNNVN  60
HENARQDAIN VALERNPAAF MPKVLNSTAH NCESKAAEGD IVGKHTKGCK CKRTECLKKY  120
CECFKASVFC SENCRCTGCK NYKSNADRIS QKNTVHAHHV QNPASSGMVG QSVIIFHAAE  180
NDSSLSLAAS VSDHSINNNT SHALSCSLTS SVTREDAKSL VKYVPHEVTY RPSLADIIQI  240
EDVNELCNLL ILVSRQAGAT LLESGMKENT KRKKLNRVDS CLSSTNHDRE AIQKEPAKQM  300
CSLEKSSNEV LIAEGRLELP RADPFDIQKG NKRPLSPGTQ ALMCDEQDAV FQDSKAPDAT  360
PSTTEENLVD IFKEQEKRVL TNFRDYLCKL ATCGKLQELK LSLASTNCSE QAFADHGNNS  420
SITRVAKVTR IRQTIPQFSS KAASTTALDV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-262614814127Protein lin-54 homolog
5fd3_B4e-262614814127Protein lin-54 homolog
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.611980.0panicle
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g28214.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g28214
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0714930.0AK071493.1 Oryza sativa Japonica Group cDNA clone:J023097M11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650564.10.0protein tesmin/TSO1-like CXC 6 isoform X2
TrEMBLA0A0E0AUQ10.0A0A0E0AUQ1_9ORYZ; Uncharacterized protein
STRINGOGLUM08G13570.10.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20110.29e-63Tesmin/TSO1-like CXC domain-containing protein