PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g28214.2
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family CPP
Protein Properties Length: 599aa    MW: 65695.2 Da    PI: 8.4849
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g28214.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR36.97e-12171209342
               TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                       k +C+Ck skClk+YCeCf++g++C   C+C++C+N+ ++
  LOC_Os08g28214.2 171 KTNCSCKYSKCLKLYCECFEKGRYCIG-CNCTNCCNNVNH 209
                       789************************.********9875 PP
2TCR47.34.1e-15252292141
               TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                       k++kgC+Ck+++ClkkYCeCf+a ++Cse+C+C++CkN ++
  LOC_Os08g28214.2 252 KHTKGCKCKRTECLKKYCECFKASVFCSENCRCTGCKNYKS 292
                       589***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.4E-7169209IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163433.401170292IPR005172CRC domain
PfamPF036385.0E-8172206IPR005172CRC domain
SMARTSM011147.4E-16252293IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.3E-11255290IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MEKPLQLCPG SVKIDFASAS YAGKADIAAT AAALLHALGP PRTPPCYQLP LAKVNSSLPL  60
WPPVICPSTF AQKRPMSLPS PPPAKKLQVQ QSSSMLPQDF PKLEVLPVEK PTKLQVRRSP  120
QHVSPALKQD SPKMERPLLP RPATFIDVML SSQKPSSEMW SETKDVTLTR KTNCSCKYSK  180
CLKLYCECFE KGRYCIGCNC TNCCNNVNHE NARQDAINVA LERNPAAFMP KVLNSTAHNC  240
ESKAAEGDIV GKHTKGCKCK RTECLKKYCE CFKASVFCSE NCRCTGCKNY KSNADRISQK  300
NTVHAHHVQN PASSGMVGQS VIIFHAAEND SSLSLAASVS DHSINNNTSH ALSCSLTSSV  360
TREDAKSLVK YVPHEVTYRP SLADIIQIED VNELCNLLIL VSRQAGATLL ESGMKENTKR  420
KKLNRVDSCL SSTNHDREAI QKEPAKQMCS LEKSSNEVLI AEGRLELPRA DPFDIQKGNK  480
RPLSPGTQAL MCDEQDAVFQ DSKAPDATPS TTEENLVDIF KEQEKRVLTN FRDYLCKLAT  540
CGKLQELKLS LASTNCSEQA FADHGNNSSI TRVAKVTRIR QTIPQFSSKA ASTTALDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-2517429614127Protein lin-54 homolog
5fd3_B2e-2517429614127Protein lin-54 homolog
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.532330.0callus| flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329815160.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g28214.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g28214
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0714930.0AK071493.1 Oryza sativa Japonica Group cDNA clone:J023097M11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650564.10.0protein tesmin/TSO1-like CXC 6 isoform X2
TrEMBLA0A0E0AUQ10.0A0A0E0AUQ1_9ORYZ; Uncharacterized protein
STRINGOGLUM08G13570.10.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20110.22e-62Tesmin/TSO1-like CXC domain-containing protein