PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os08g27220.1 | ||||||||
Common Name | OJ1014_E02.25, OsJ_27050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 313aa MW: 33358.9 Da PI: 9.7012 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 31.6 | 4.2e-10 | 117 | 158 | 5 | 50 |
AP2 5 GVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaar 50 GV+++ grW++ rd + r +lg+f ++eeA++a++a+ LOC_Os08g27220.1 117 GVYQRQ-PGRWAVDFRD----SqLKVRQWLGTFPSEEEARAAYDAFE 158 9**998.9******888....23459*******************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 12.484 | 114 | 175 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-11 | 117 | 162 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.0E-4 | 117 | 164 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-9 | 117 | 162 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.0E-6 | 117 | 158 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MVAFRRIRIS YSDPDATDSD SDSDSADAGD HDISSRSSRT NAAARRKVIV ISLSRKKGRS 60 LSQSGRHYRR RRSEIPAAAA KAVEAEDWPS SSDGMRRGAV AAARSASAAA KKGSRGGVYQ 120 RQPGRWAVDF RDSQLKVRQW LGTFPSEEEA RAAYDAFEVQ VRASLSRGGA GASSPAVAIA 180 PSPARVKIQL PAPRRASGRR KKTQTTATVT TTTTTESLSQ VTASSASPSS KEAPPPSSSA 240 SAATPPPLNP PPFVVDTFLG EDDHLAADED DRFGFGLADL GHLPLPFLDD NDMDFKLSDS 300 DDLSFLFDIG FM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 54 | 71 | RKKGRSLSQSGRHYRRRR |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q6YY97 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os08g27220.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os08g27220 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005628 | 0.0 | AP005628.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1014_E02. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025875765.1 | 0.0 | ethylene-responsive transcription factor ERF073 | ||||
TrEMBL | Q6YY97 | 0.0 | Q6YY97_ORYSJ; Uncharacterized protein | ||||
STRING | ONIVA03G02550.1 | 1e-124 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14003 | 20 | 23 | Representative plant | OGRP17021 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-06 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os08g27220.1 |