PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os08g26880.1 | ||||||||
Common Name | LOC4345363, OsJ_27035 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bZIP | ||||||||
Protein Properties | Length: 181aa MW: 20128.5 Da PI: 8.6814 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 54.9 | 2e-17 | 36 | 96 | 3 | 63 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +lkr rrk++NRe+A+rsR+RK++ ++ L+ v +L+ eN++L +l++ ++ +a +s++ LOC_Os08g26880.1 36 DLKRKRRKESNRESAKRSRLRKQQHLDDLTSQVNQLKMENQQLTTTLNMVTQSCAFAESQN 96 79****************************************************9777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 3.0E-14 | 31 | 90 | No hit | No description |
SMART | SM00338 | 1.5E-17 | 34 | 98 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 5.7E-14 | 36 | 95 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.266 | 36 | 88 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.19E-12 | 37 | 91 | No hit | No description |
CDD | cd14702 | 8.21E-22 | 39 | 90 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 41 | 56 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MTLSGGTLSS GITSGSSHGT RSSGSEGDIQ LQVQMDLKRK RRKESNRESA KRSRLRKQQH 60 LDDLTSQVNQ LKMENQQLTT TLNMVTQSCA FAESQNSVLR TQMMELDSRL SALREIIFYM 120 NNGNQSPSNP TIAATTYPST TTMTAATTGH YDYYDVFTAN AWGSGMQMMQ QPIDQFLYQC 180 * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 37 | 42 | KRKRRK |
2 | 38 | 43 | RKRRKE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.53880 | 0.0 | callus| flower| leaf| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32985789 | 0.0 | ||||
Expression Atlas | A3BSC5 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os08g26880.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os08g26880 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK100580 | 0.0 | AK100580.1 Oryza sativa Japonica Group cDNA clone:J023105M12, full insert sequence. | |||
GenBank | AP005520 | 0.0 | AP005520.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0426E02. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 0.0 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015651067.1 | 1e-132 | bZIP transcription factor 44 | ||||
TrEMBL | A0A0E0QHY4 | 1e-131 | A0A0E0QHY4_ORYRU; Uncharacterized protein | ||||
TrEMBL | A3BSC5 | 1e-131 | A3BSC5_ORYSJ; Uncharacterized protein | ||||
STRING | ORUFI08G13590.1 | 1e-132 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3740 | 32 | 76 | Representative plant | OGRP10708 | 4 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75390.1 | 1e-14 | basic leucine-zipper 44 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os08g26880.1 |
Entrez Gene | 4345363 |