PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os08g25820.2 | ||||||||
Common Name | LOC9267033, Os08g0346500, OSNPB_080346500, P0404D10.4, P0410E11.135 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | G2-like | ||||||||
Protein Properties | Length: 308aa MW: 33379.1 Da PI: 6.1825 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.6 | 2.8e-33 | 45 | 99 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++rlrWt+eLH+rFveav+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl LOC_Os08g25820.2 45 RQRLRWTNELHDRFVEAVTQLGGPDRATPKGVLRIMGVPGLTIYHVKSHLQKYRL 99 58****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.757 | 42 | 102 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-32 | 44 | 100 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.58E-18 | 44 | 99 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.3E-26 | 46 | 100 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.1E-9 | 47 | 98 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.5E-23 | 131 | 177 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009066 | anatomy | anther | ||||
PO:0001004 | developmental stage | anther development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MYQPNPISSS GQTHGNPTAH EQMELGNNAI VPSNGGNNNP NMAARQRLRW TNELHDRFVE 60 AVTQLGGPDR ATPKGVLRIM GVPGLTIYHV KSHLQKYRLA KYIPDPSADD NKDEDKDPGN 120 LLSALEGSSG MQISEALKLQ MEVQKRLHEQ LEVQRQLQLR IEAQGKYLQK IIEEQQRVIG 180 AGASRATSSE QLPDSEKTNP PTPVPISESP VQGAPHSKNS QSQVEPTKSP SHDDALPCGE 240 PLTPDSSCRP GSPTLSPKHE RAAKRQRGSD AGDVTAFADG EFVLPPGIFE SSTGSEFQEC 300 SMPYSGH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-23 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-23 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-23 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-23 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q84QT0 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os08g25820.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os08g25820 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004396 | 0.0 | AP004396.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0404D10. | |||
GenBank | AP004459 | 0.0 | AP004459.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0410E11. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648505.1 | 0.0 | myb family transcription factor PHL7 | ||||
Swissprot | Q9SJW0 | 5e-91 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A0D3GZB6 | 0.0 | A0A0D3GZB6_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0QHS2 | 0.0 | A0A0E0QHS2_ORYRU; Uncharacterized protein | ||||
TrEMBL | I1QHZ5 | 0.0 | I1QHZ5_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q84QT0 | 0.0 | Q84QT0_ORYSJ; Os08g0346500 protein | ||||
STRING | ORUFI08G13040.2 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS08T0346500-00 | 0.0 | (Oryza sativa) | ||||
STRING | ORGLA08G0104600.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | OBART08G11790.2 | 0.0 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 1e-77 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os08g25820.2 |
Entrez Gene | 9267033 |