PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os08g25799.1 | ||||||||
Common Name | LOC4345340, Os08g0346400, OsJ_26993, OSNPB_080346400, P0404D10.1-1, P0410E11.132-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | G2-like | ||||||||
Protein Properties | Length: 247aa MW: 26888.5 Da PI: 8.4777 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106.5 | 1.5e-33 | 34 | 88 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av+qLGG++kAtPkti+++m+vkgLtl h+kSHLQkYRl LOC_Os08g25799.1 34 KPRLRWTADLHDRFVDAVAQLGGPDKATPKTIMRTMGVKGLTLFHLKSHLQKYRL 88 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.918 | 31 | 91 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.4E-32 | 31 | 89 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.18E-16 | 34 | 90 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-24 | 34 | 89 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.6E-8 | 36 | 87 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 5.9E-21 | 129 | 174 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MFPGLIHHHR LLDADVGGGG GGSSAGLVLT ADPKPRLRWT ADLHDRFVDA VAQLGGPDKA 60 TPKTIMRTMG VKGLTLFHLK SHLQKYRLGK QSGKEMAEQS KDASYILGAQ SGTNLSPTVP 120 TPDLKESQEL KEALRAQMEV QRKLHEQVEV QRHVQIRMEA YQNYIDTLLE KACNIVSEQL 180 NGFSISDHDL TSAGVMLSSS DTLSPSIFHQ LSVSSISLHS PGGKSSPFAA DADLFFQKAP 240 EKRKSY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-17 | 34 | 90 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-17 | 34 | 90 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-17 | 34 | 90 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-17 | 34 | 90 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-17 | 34 | 90 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-17 | 34 | 90 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-17 | 34 | 90 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-17 | 34 | 90 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-17 | 34 | 90 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-17 | 34 | 90 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-17 | 34 | 90 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-17 | 34 | 90 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.15464 | 0.0 | callus| flower| leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q84QT1 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os08g25799.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os08g25799 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK103873 | 0.0 | AK103873.1 Oryza sativa Japonica Group cDNA clone:J033149L11, full insert sequence. | |||
GenBank | CT834232 | 0.0 | CT834232.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN036L13, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650961.1 | 0.0 | protein PHR1-LIKE 3 | ||||
Swissprot | Q8LAJ7 | 9e-68 | PHL3_ARATH; Protein PHR1-LIKE 3 | ||||
TrEMBL | A0A0E0AUD5 | 0.0 | A0A0E0AUD5_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0IGX5 | 0.0 | A0A0E0IGX5_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0QHR9 | 0.0 | A0A0E0QHR9_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q84QT1 | 0.0 | Q84QT1_ORYSJ; Os08g0346400 protein | ||||
STRING | ORUFI08G13020.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS08T0346400-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3427 | 38 | 73 | Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13640.1 | 6e-67 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os08g25799.1 |
Entrez Gene | 4345340 |
Publications ? help Back to Top | |||
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