PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g25260.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 585aa    MW: 68508.6 Da    PI: 8.5007
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g25260.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR180.14e-2557146190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       kfY +YAk  GFsvrk++ k++  +gei++r+fvCs+eg+re ++ + te++r++ra tr+gC akl++++++ +g+w v++++++H+Hela
  LOC_Os08g25260.1  57 KFYLDYAKGKGFSVRKNNLKRK--DGEIIWRQFVCSCEGYRELKHFErTERKREPRALTRCGCLAKLEIERNEeKGVWFVKEFDNQHTHELA 146
                       6****************99887..9*****************999876899999******************99****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.1E-2457146IPR004330FAR1 DNA binding domain
PfamPF105516.3E-28208297IPR018289MULE transposase domain
PROSITE profilePS509668.815481518IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MTWLRFESSF YKGFNNGRII REEHVRSETS SYVILEDQEE YKMMGTVVFS SKEECYKFYL  60
DYAKGKGFSV RKNNLKRKDG EIIWRQFVCS CEGYRELKHF ERTERKREPR ALTRCGCLAK  120
LEIERNEEKG VWFVKEFDNQ HTHELANPDH VAFLGVHHVM SDFKKAQAVE LRMSGLRPFQ  180
IMEVMENNHD ELDEVGFVMK DLYNFFTRTY HVNKYNLPFI PFIGVNYHIS TTIFGCGILS  240
NEYVNSYCWL LETFLEAMRQ VHPKSLITDG DLAMAKAISK VMPGAYHRLC TWHIEENMSR  300
HLRKPKLDEL RKLIYENMDE DKFERRWADF KENGGTGNGQ WIALMYRLRE KWAAAYTYWK  360
YLLGMHSNQC SESLNSKLHT LLKRNMSLMC LVKHVKLCIQ RLHKKEAQLD AKSTNSVPFC  420
RIDADPLEKD VARIYTAVVF KTIRAQIRLI AGLEVISGTN QDGSSLYAVG LKDDNEVWDE  480
VRVTFKGQAL EGVECHCRKM ECEDIPCSHI FVVLKFLGFD TISRCCVVDR WTMGAKATFR  540
SDRNADPNVW SEHMVRYRSL RNLGSDAFFE AARNSSRQKR RWIS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.801530.0root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976024520.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g25260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g25260
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0045530.0AP004553.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1790_D02.
GenBankAP0054910.0AP005491.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0062G05.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611182.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLQ0JE760.0Q0JE76_ORYSJ; Os04g0316800 protein
STRINGSi015784m1e-177(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.21e-48FAR1-related sequence 4