PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g23570.1
Common NameOs08g0325134, OsJ_26886, OSJNBa0078D03.39, P0703C03.19
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 392aa    MW: 44670.6 Da    PI: 6.8425
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g23570.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3521.3e-16461231598
                       -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                       +l++pk+f+++ +g+   + +++le+ + +s++v++  +k+++++++++GW +Fvk  +L  gD+++F+++g+s+f   v +f+
  LOC_Os08g23570.1  46 QLTIPKEFVQRLKGD--IPEEIQLETHNRNSYTVRV--DKSQEKVIFAAGWAQFVKTFDLHMGDSMMFRFKGNSQF--DVIIFD 123
                       79*******999888..5668***************..**********************************9999..777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.08E-1922123IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-1924124IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.6E-634125IPR003340B3 DNA binding domain
PfamPF023629.5E-1446123IPR003340B3 DNA binding domain
CDDcd100176.79E-1646123No hitNo description
PROSITE profilePS5086311.6647125IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MGTWCERCRR RDEQDYRNLD DCQKHFLLLM MGDFQHEIRG EQIVEQLTIP KEFVQRLKGD  60
IPEEIQLETH NRNSYTVRVD KSQEKVIFAA GWAQFVKTFD LHMGDSMMFR FKGNSQFDVI  120
IFDQVGREKV CSVAVDDYLD PNVQEGRTDA TETLNSSRAH SQDDYLDPNV QEGRTNATET  180
LNSSRAHSQP MPMQTPATET LNSSRAHSQD MPMQSPATET LNSSRAHPQP MPMQLPTETV  240
NHFHAPHYPM QMPIENMALS RTQAMPTQMQ SPPTYRWTQV QRDNLRYSLP SEDQGCRVGV  300
IPDPIIGRRT KLNPVQEKVV NFKIQHIHSE IPIFVAVIKR SNVSGVLSTL SVAKRYVDEY  360
LGGERFISLS RLGGKWGIRL LLVGVGVAQG W*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6Z0D2
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g23570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g23570
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046370.0AP004637.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0703C03.
GenBankAP0054930.0AP005493.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0078D03.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025875809.10.0putative B3 domain-containing protein Os08g0325100
SwissprotQ6Z0D20.0Y8251_ORYSJ; Putative B3 domain-containing protein Os08g0325100
TrEMBLA0A0E0QHD00.0A0A0E0QHD0_ORYRU; Uncharacterized protein
STRINGORUFI08G11820.10.0(Oryza rufipogon)
STRINGOS08T0325134-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124821536
Representative plantOGRP1394224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-12B3 family protein