PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g23470.1
Common NameOs08g0324300, OSJNBa0078D03.26, P0703C03.6
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 271aa    MW: 30592.5 Da    PI: 6.6959
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g23470.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.44.6e-1731111995
                       HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                       +   ++ +++pk+f+++ +g+   + +++le+++ +s +v++  +k+++++++t+GW +Fvk  +L+ gD+++F+++g+s+f   v 
  LOC_Os08g23470.1  31 MGDFQHEMIIPKEFVQRLKGD--IPGEIQLETRNRNSHTVRV--DKTQEKVIFTEGWAQFVKTFDLQMGDSMMFRFNGNSQF--DVI 111
                       5556788********999888..5558***************..*********************************99999..554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-2120114IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.0E-2020114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.71623116IPR003340B3 DNA binding domain
CDDcd100174.08E-1824114No hitNo description
SMARTSM010199.8E-826116IPR003340B3 DNA binding domain
PfamPF023626.7E-1534109IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MGTSCERCRR RDEQDYRNLD DSQKHFLLTM MGDFQHEMII PKEFVQRLKG DIPGEIQLET  60
RNRNSHTVRV DKTQEKVIFT EGWAQFVKTF DLQMGDSMMF RFNGNSQFDV IIVDQIGREK  120
ACSAVVDDSQ NPNVQERRVD ATETLNSSRA HSQPMPMQST TETVNHSHAR PCPMHTAVDC  180
MPLSHAHPQP MPMQFPTETV NHCHAPTGPM EMPLENVALS HAHARPLQMQ SQPTDRLTQV  240
QRGNSSKGNM TTMSSSSMSS GYNSIIICIS *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.526230.0callus| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329783770.0
Expression AtlasQ6Z0D9-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g23470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g23470
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0683590.0AK068359.1 Oryza sativa Japonica Group cDNA clone:J013146O10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648704.10.0B3 domain-containing protein Os08g0324300
RefseqXP_015648705.10.0B3 domain-containing protein Os08g0324300
RefseqXP_015648706.10.0B3 domain-containing protein Os08g0324300
RefseqXP_015648707.10.0B3 domain-containing protein Os08g0324300
SwissprotQ6Z0D90.0Y8347_ORYSJ; B3 domain-containing protein Os08g0324300
TrEMBLI1QHL10.0I1QHL1_ORYGL; Uncharacterized protein
STRINGOS08T0324300-010.0(Oryza sativa)
STRINGORGLA08G0091200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124821536
Representative plantOGRP1394224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-13B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]