PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os08g19650.1 | ||||||||
Common Name | OJ1705_A03.8, Os08g0292900, OSH45, OSJNBb0075O18.121 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | TALE | ||||||||
Protein Properties | Length: 279aa MW: 30891.6 Da PI: 6.1065 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 24.2 | 5.6e-08 | 220 | 253 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + LOC_Os08g19650.1 220 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 253 569*****************************87 PP | |||||||
2 | ELK | 27 | 9.9e-10 | 174 | 195 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++L+++++E++ LOC_Os08g19650.1 174 ELKHELKQGYKEKLIDIREEIL 195 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 7.3E-20 | 10 | 54 | IPR005540 | KNOX1 |
Pfam | PF03790 | 4.6E-18 | 12 | 53 | IPR005540 | KNOX1 |
SMART | SM01256 | 5.5E-27 | 63 | 119 | IPR005541 | KNOX2 |
Pfam | PF03791 | 9.1E-19 | 71 | 118 | IPR005541 | KNOX2 |
Pfam | PF03789 | 1.8E-4 | 174 | 195 | IPR005539 | ELK domain |
SMART | SM01188 | 0.004 | 174 | 195 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.039 | 174 | 194 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.742 | 194 | 257 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.52E-16 | 196 | 261 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.8E-11 | 196 | 261 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.63E-12 | 197 | 258 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-25 | 201 | 258 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 7.1E-18 | 214 | 253 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009722 | Biological Process | detection of cytokinin stimulus | ||||
GO:0071345 | Biological Process | cellular response to cytokine stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MGGGGEADAA RCKAEILAHP LYEQLLSAHV ACLRIATPVD QLPRIDAQLA QSQGVVAKYS 60 ALAAAAAGDD GRELDQFMTH YVLLLCSFKE QLQQHVRVHA MEAVMACWEL EQNLQSLTGA 120 SPGEGTGATM SDGEDDQADS EANMYDPSLD GADNMGFGLP TESERSLMER VRQELKHELK 180 QGYKEKLIDI REEILRKRRA GKLPGDTTST LKAWWQSHAK WPYPTEEDKA RLVQETGLQL 240 KQINNWFINQ RKRNWHSNPS SSTSVKTKRK SNAGDNNS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 1e-12 | 197 | 261 | 8 | 72 | Homeobox protein PKNOX1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.5992 | 0.0 | flower| leaf| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 37988308 | 0.0 | ||||
Expression Atlas | Q0J6N4 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Isoforms 1 and 2 are expressed in roots, stems, shoot meristem, leaf blades, leaf sheaths and flowers. Isoform 3 is expressed in stems, shoot meristem, rachis, leaf blades and leaf sheaths. {ECO:0000269|PubMed:7599652}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Isoform 3 acts as transcription activator, but isoforms 1 and 2 do not. {ECO:0000269|PubMed:7599652}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os08g19650.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os08g19650 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT834586 | 0.0 | CT834586.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN056I08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650701.2 | 0.0 | LOW QUALITY PROTEIN: homeobox protein knotted-1-like 13 | ||||
Swissprot | Q0J6N4 | 0.0 | KNOSD_ORYSJ; Homeobox protein knotted-1-like 13 | ||||
TrEMBL | A0A0E0ISF3 | 0.0 | A0A0E0ISF3_ORYNI; Uncharacterized protein | ||||
STRING | OGLUM08G10220.2 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP564 | 38 | 169 | Representative plant | OGRP167 | 17 | 148 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.1 | 1e-160 | KNOTTED1-like homeobox gene 3 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os08g19650.1 |
Publications ? help Back to Top | |||
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