PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os08g19590.3 | ||||||||
Common Name | LOC4345188, Os08g0292000, OSJNBb0075O18.108-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 785aa MW: 86415.9 Da PI: 8.3395 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.3 | 1.5e-19 | 63 | 118 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 r+ + +t +q e+L+++F+++++p++++ ++LAk+l++te+q+k+WFqN R+k+kk LOC_Os08g19590.3 63 RRYQLLTMQQKETLNRAFQSCPNPDRNDLKKLAKELNMTETQIKYWFQNCRTKMKK 118 6677899************************************************8 PP | |||||||
2 | START | 108 | 1.5e-34 | 269 | 498 | 6 | 204 |
HHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS START 6 aaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 ++++l+ k +++ p+W es+n++e+l k + + +++ + r++++v + +++lv++lld + +W e ++ +a t++ LOC_Os08g19590.3 269 ENESLLVKKKENGPLWLPHMdilgvESLNYQEYLAKSRTI-GqkpvdFKVVVTRDTAIVNGSCVDLVKSLLDAN-RWRELFPgivaSANTTKI 359 45666677789999999888899999********999553.3589999**************************.******99999******* PP ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..........-TTSEE...-EESSEEEEEEEEC CS START 85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.........sssvvR...aellpSgiliepks 158 is+g g lqlm aelq++sp vp d++f+R++ q g g w +vdvS+d + ++ ss +R ++llpSg++ie+++ LOC_Os08g19590.3 360 ISTGpsnlhdGLLQLMRAELQVMSPEVPvCDVTFLRQSVQFGSGLWCVVDVSIDTILPGESktaqssvqtSSTAARrmeVRLLPSGCVIEEME 452 *****************************************************97666655543222333222233445999*********** PP TCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS START 159 nghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204 ng+skvtw+ h+ +++r ++ l++sl++s a ga +wva lqr+ LOC_Os08g19590.3 453 NGYSKVTWMVHAAYDERAVPVLYHSLLRSAKALGACRWVASLQRHS 498 ********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-15 | 49 | 101 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.77E-18 | 51 | 120 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.742 | 59 | 119 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.9E-17 | 61 | 123 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.57E-18 | 62 | 118 | No hit | No description |
Pfam | PF00046 | 4.1E-17 | 63 | 118 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-4 | 102 | 144 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 3.87E-4 | 110 | 147 | No hit | No description |
PROSITE profile | PS50848 | 25.265 | 245 | 503 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.47E-19 | 249 | 498 | No hit | No description |
CDD | cd08875 | 3.95E-93 | 249 | 499 | No hit | No description |
SMART | SM00234 | 2.8E-12 | 254 | 500 | IPR002913 | START domain |
Pfam | PF01852 | 2.1E-27 | 272 | 498 | IPR002913 | START domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 785 aa Download sequence Send to blast |
MNGELKLMAS YVSKLKFILQ KDQQQEPHTA NLLVLLGSSN QDKRNGLSQG ENRMDTCTRK 60 KPRRYQLLTM QQKETLNRAF QSCPNPDRND LKKLAKELNM TETQIKYWFQ NCRTKMKKFK 120 NNEERKLLQK ENEELKKENA ELRNRMKNST CRACDLPLFH IDCRHWENPM LNKGNHGVTS 180 NLIPQAVSSL LPSSSGFVAS GSNLSSNAVL MPVSAMPSSV LQPAPAVSGA NFPILHNLSA 240 NANDGYTEKN VLLDLANRAM EEFFSLMKEN ESLLVKKKEN GPLWLPHMDI LGVESLNYQE 300 YLAKSRTIGQ KPVDFKVVVT RDTAIVNGSC VDLVKSLLDA NRWRELFPGI VASANTTKII 360 STGPSNLHDG LLQLMRAELQ VMSPEVPVCD VTFLRQSVQF GSGLWCVVDV SIDTILPGES 420 KTAQSSVQTS STAARRMEVR LLPSGCVIEE MENGYSKVTW MVHAAYDERA VPVLYHSLLR 480 SAKALGACRW VASLQRHSQF LSGLHKYIFC PDSTKVVMRR KVLYLVKQMT SSFTGLFASM 540 SKATLQDGDD THFAHQIVGG ATGEPAGLLL SATTTIWLPG VNPRHVYDHL RDEQCHGEWR 600 CLLGEQLHQG NALPYGAPLN GETVPEFYRM VNGLHEGHAI SLISPREMGG NISNTLLLQE 660 ARTDLSGSLI VYARTDVNTV HSIMNSGLNP ATVFLVSSGC AILPDCLESF PLHPAATADQ 720 AGTSSAAIAS RSETGGSFVT VTYQMFFSSQ GGAAPASSSI HQGRDALKKA TDIFKVVLDT 780 LTVA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.53657 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32985650 | 0.0 | ||||
Expression Atlas | Q7EYP6 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os08g19590.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os08g19590 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK100441 | 0.0 | AK100441.1 Oryza sativa Japonica Group cDNA clone:J023089M04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650917.1 | 0.0 | homeobox-leucine zipper protein ROC6-like isoform X2 | ||||
TrEMBL | Q7EYP6 | 0.0 | Q7EYP6_ORYSJ; Os08g0292000 protein | ||||
STRING | OS08T0292000-01 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 1e-90 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os08g19590.3 |
Entrez Gene | 4345188 |