PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os08g17640.1 | ||||||||
Common Name | OSJNBa0091M20.24 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 307aa MW: 30612.2 Da PI: 8.6645 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.3 | 0.00012 | 107 | 129 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C + F ++ L H++ H LOC_Os08g17640.1 107 FKCNYCQRKFYTSQALGGHQNAH 129 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.26E-6 | 104 | 134 | No hit | No description |
PROSITE profile | PS50157 | 11.572 | 107 | 134 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 109 | 129 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MASSSQTTVS MEVAMKVEGS GGGGGDGEEG EVVAKKEEEV AAAAAAMELD LLGALRAEEV 60 MPAEKGKAAV VMVGEAVAPS VEERASAVAA AAANGGGGGG EARRRLFKCN YCQRKFYTSQ 120 ALGGHQNAHK RERSLAKRGA AVAAAAAAAG RGLYGFGDPF VPHHLRFRSL WPYPAAAGAA 180 RTTPFLGRGS ASAAAAAAAP AAPFYGAVHH GWSTQPPSSL QGIAARHAAA ERPVYPADAF 240 GYGAGSSSSR ATGAPASAGL RWAEGGGSGT IHSAAAAAAA GEQHTAAEVK AQEEMSSSKI 300 DLTLKL* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q6Z1L5 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os08g17640.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os08g17640 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005415 | 0.0 | AP005415.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0091M20. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025875762.1 | 0.0 | zinc finger protein 4 | ||||
TrEMBL | Q6Z1L5 | 0.0 | Q6Z1L5_ORYSJ; Uncharacterized protein OSJNBa0091M20.24 | ||||
STRING | ONIVA08G09500.1 | 1e-156 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13064 | 22 | 30 | Representative plant | OGRP82 | 15 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80730.1 | 6e-17 | zinc-finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os08g17640.1 |