PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g15510.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 470aa    MW: 53134.7 Da    PI: 7.3704
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g15510.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.62.7e-2079169190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       +fYn+Y  + GFs+r+s+ ++  +++ i++ tf+Cs++g+r ++k++       + +r+etr++C+a++k+++  dg + +++++ eHnH+la
  LOC_Os08g15510.1  79 DFYNDYL-KKGFSIRRSSYHYMGNTKIIKNMTFCCSRQGSRGTDKRAeasGYGDSYSRPETRCKCQACMKISLI-DGFYSIYHFVPEHNHNLA 169
                       69****5.67********************************999994443445669*****************.****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.5E-1579169IPR004330FAR1 DNA binding domain
PfamPF105511.4E-11282326IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MLIRRFSYQD ASSLSRYPVP GDVSSSYSLG LFWWANCVST LTRTLPNLGT MLDELPIPRP  60
MPSQLQNTVT CALNKKLIDF YNDYLKKGFS IRRSSYHYMG NTKIIKNMTF CCSRQGSRGT  120
DKRAEASGYG DSYSRPETRC KCQACMKISL IDGFYSIYHF VPEHNHNLAT RSQAHQLRSQ  180
RKINEAQVAS VEVAKSVGIS TKAAIDLMAK QACGFENLGF TRVDMKNKLY SKRSLQTKQG  240
DTGGVLEYME KKASEDVKFF YSIQVDEDDL ITNIFCADSK MVADYENSGK KPKTILTDED  300
GAMAKAIKIV LPETHHRICV WHMNQNACKH LAGLVGDKRY EEVKCDFRAT QSTPKLKAEL  360
RILRDVAEVY TPAVYKIFEE EVMQTLNCDI FYCGEVDAEK VYKIKANAST AAKSEETYSM  420
STNCVEKLAE DIEKFLRIRS DLDLDDVSID HIMDLLDPSS CTLMQLDID*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g15510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g15510
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0041550.0AP004155.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1112_D12.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLC7J2F71e-164C7J2F7_ORYSJ; Os05g0475600 protein
STRINGORGLA06G0284700.11e-144(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-24FAR1-related sequence 5