PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os08g15050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | CO-like | ||||||||
Protein Properties | Length: 304aa MW: 29943.1 Da PI: 6.5002 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19 | 3e-06 | 17 | 59 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C ++ ++ +C + lC C + H H++vpl LOC_Os08g15050.1 17 ACGVCGGA-ATVYCAADAAALCVPCDAAVHAAnplasrHDRVPL 59 6******9.*********************66899999999986 PP | |||||||
2 | CCT | 66.6 | 6.8e-23 | 192 | 235 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Re++++RY+eKrk+RkF+K+irY+sRKa+Ae RpR+KGrFvk+a LOC_Os08g15050.1 192 REERVRRYREKRKNRKFQKTIRYASRKAYAEARPRIKGRFVKRA 235 9*****************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.3E-9 | 13 | 59 | IPR000315 | B-box-type zinc finger |
PROSITE pattern | PS00197 | 0 | 13 | 21 | IPR006058 | 2Fe-2S ferredoxin, iron-sulphur binding site |
PROSITE profile | PS50119 | 9.343 | 18 | 59 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.93E-6 | 26 | 59 | No hit | No description |
Pfam | PF06203 | 2.0E-17 | 192 | 234 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.479 | 192 | 234 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0051537 | Molecular Function | 2 iron, 2 sulfur cluster binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MMASDGSASP ASCGGAACGV CGGAATVYCA ADAAALCVPC DAAVHAANPL ASRHDRVPLA 60 VAMAAASSGV YDHLFAPDDD AASSWAAAAA AGAAVQGQGQ GSPNDSSSSF TNDSAGGGGG 120 GGAERSLFDL LSDVDIMSCG GGGLASSFDG AAAPPLWLHP GQLAALTPWS PADSVVVPTS 180 AAGAVAAAAA AREERVRRYR EKRKNRKFQK TIRYASRKAY AEARPRIKGR FVKRATTAAA 240 SSSSDDDSTA AAGVSGAGGA GAAATKEAKF WLSFSDDGRA DGVGFYMDST TAATAAYGVV 300 PTF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.16422 | 0.0 | leaf| root| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116634000 | 0.0 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os08g15050.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os08g15050 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005495 | 0.0 | AP005495.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBb0003H03. | |||
GenBank | AP005799 | 0.0 | AP005799.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0012K14. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648718.1 | 0.0 | zinc finger protein CONSTANS-LIKE 3 | ||||
TrEMBL | A0A0E0QGB3 | 0.0 | A0A0E0QGB3_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI08G08820.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13066 | 22 | 24 | Representative plant | OGRP12979 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57660.1 | 5e-10 | CONSTANS-like 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os08g15050.1 |