PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os08g14880.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | FAR1 | ||||||||
Protein Properties | Length: 190aa MW: 20870.9 Da PI: 9.1991 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 41.9 | 3.2e-13 | 24 | 93 | 23 | 90 |
FAR1 23 krngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +++ i+++tf+Cs +g+r +k++ + +++et+++C+a++k+++ dg + v++++ eH+H+la LOC_Os08g14880.2 24 GNTKIIKNKTFCCSYQGTRGIDKRAeaaGYGDSFSKPETQCKCQACMKISLI-DGLYSVYHFVPEHSHNLA 93 5678899************9999984444455669*****************.****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.0E-8 | 24 | 93 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MTSIMLMLVK KVSTLEEAAI DHVGNTKIIK NKTFCCSYQG TRGIDKRAEA AGYGDSFSKP 60 ETQCKCQACM KISLIDGLYS VYHFVPEHSH NLATKSQAHQ LRSQRKINEA QVASVEVAKS 120 VGISTKEAID LMAKQACGFE NLGFTSVDMK NKLYSKRSLQ TKQGDAGGVL EYMEKKASED 180 GRSKNNFDK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.89588 | 0.0 | callus| flower| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os08g14880.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os08g14880 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005064 | 0.0 | AP005064.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0049G15. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 0.0 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880433.1 | 7e-70 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | C7J2F7 | 2e-99 | C7J2F7_ORYSJ; Os05g0475600 protein | ||||
STRING | ORGLA06G0284700.1 | 5e-85 | (Oryza glaberrima) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 9e-13 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os08g14880.2 |