PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g13840.1
Common NameOs08g0235800, OSNPB_080235800
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 308aa    MW: 31969.2 Da    PI: 10.7616
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g13840.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.87.2e-31242300259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        D+y+WrKYGqK++kgs++pr+YYrC++  gCp++k+ver+a+dp ++++tYeg+H+h+
  LOC_Os08g13840.1 242 ADEYSWRKYGQKPIKGSPYPRGYYRCSTVkGCPARKHVERAADDPATLVVTYEGDHRHS 300
                       69************************9888****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.8E-15194239IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.1E-32228302IPR003657WRKY domain
PROSITE profilePS5081131.491236302IPR003657WRKY domain
SuperFamilySSF1182901.83E-26239302IPR003657WRKY domain
SMARTSM007743.4E-36241301IPR003657WRKY domain
PfamPF031064.5E-26243299IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MAVDLMGFSP RGGCRPSVET EQLAFQEAAA AGLRSLELLV SSLSAGGEHH HRRRPQEKQS  60
SPPLGEIADQ AVSRFRKVIS ILDRTGHARF RRGPVVGAAA AEAAAAAASA SPSSSPVSPP  120
LPPVTTQPAA AVKSLTLDFT NPAKVAAASV TSTSFFSSVT AGGDGSVSKG RSLVSSGKPP  180
LAGGVKRKHP HPPCAAAGDG HGHGAGHAHA HGGCHCSKKR KQRVRRTVRV AAASARVADI  240
PADEYSWRKY GQKPIKGSPY PRGYYRCSTV KGCPARKHVE RAADDPATLV VTYEGDHRHS  300
PPPPPLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-23229303275WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.829480.0leaf
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasA0A0P0XDH4
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g13840.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g13840
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046480.0AP004648.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1449_H02.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648791.10.0WRKY transcription factor WRKY51-like
SwissprotQ9SV151e-85WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBLA0A0E0QG160.0A0A0E0QG16_ORYRU; Uncharacterized protein
TrEMBLA0A0P0XDH40.0A0A0P0XDH4_ORYSJ; Os08g0235800 protein (Fragment)
TrEMBLQ6ZB090.0Q6ZB09_ORYSJ; Os08g0235800 protein
STRINGORUFI08G08070.10.0(Oryza rufipogon)
STRINGOS08T0235800-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61738171
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.24e-52WRKY DNA-binding protein 11
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]
  3. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. Ali MA,Wieczorek K,Kreil DP,Bohlmann H
    The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots.
    PLoS ONE, 2014. 9(7): p. e102360
    [PMID:25033038]
  6. Jiang CH, et al.
    Transcription factors WRKY70 and WRKY11 served as regulators in rhizobacterium Bacillus cereus AR156-induced systemic resistance to Pseudomonas syringae pv. tomato DC3000 in Arabidopsis.
    J. Exp. Bot., 2016. 67(1): p. 157-74
    [PMID:26433201]
  7. Ali MA, et al.
    Transcription factors WRKY11 and WRKY17 are involved in abiotic stress responses in Arabidopsis.
    J. Plant Physiol., 2018. 226: p. 12-21
    [PMID:29689430]