PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g10560.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NF-YC
Protein Properties Length: 531aa    MW: 58734.7 Da    PI: 5.9115
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g10560.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC150.82.7e-473594621101
             NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 
                       ql++fw++q   +e++t+fk  +lPlarikki+kadedvkmi+ eaP+l++kace+fil++tlrsw h+ee +rrtl++sd++a++++tdifd
  LOC_Os08g10560.1 359 QLQAFWADQmaeVEQMTEFKLPNLPLARIKKIMKADEDVKMIAGEAPALFAKACEMFILDMTLRSWQHTEEGRRRTLQRSDVEAVIKKTDIFD 451
                       89******9777799****************************************************************************** PP

             NF-YC  91 flvdivprdel 101
                       flvdi+  d++
  LOC_Os08g10560.1 452 FLVDIITDDKM 462
                       ******99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR008299.3E-56580IPR005795Major pollen allergen Lol pI
SuperFamilySSF495903.4E-1168138IPR007117Expansin, cellulose-binding-like domain
PfamPF013572.5E-969119IPR007117Expansin, cellulose-binding-like domain
Gene3DG3DSA:2.60.40.7606.0E-1269126IPR007117Expansin, cellulose-binding-like domain
PROSITE profilePS508439.52774117IPR007117Expansin, cellulose-binding-like domain
PRINTSPR008299.3E-58196IPR005795Major pollen allergen Lol pI
SuperFamilySSF471131.14E-28339453IPR009072Histone-fold
PfamPF008082.3E-18381443IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.9E-32382457IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0019953Biological Processsexual reproduction
GO:0005576Cellular Componentextracellular region
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MLSSMFLFLL PLSLLSFSLL GNLWAGAATS AGEGWSSVGL RLMLLGGATP FFYINIETVI  60
ITNMNYYPEG SNPVYFAVLV KYEDLDGDVV QVDLMESKSA YGGAIGVWTP MRESWGSASA  120
VTSARPFVTN NVIPAIWSRI APSLPPSPLP RRPRSALAHC RASPASVSPS ARASPTPPSP  180
RSPPHRPSRS RHLLLSGIPA AALVVACPNL NDLDFSNDHY GSTSGMRRRR RWPSCVGFWG  240
GFGDGDGDRY SITFSAYIVV LRTQEAYVQI LQQLHRSTSL EMDPHSHKKA HEGLIGDNPD  300
AYAVTTYQPV LMVEPSAAAA FPPAPQVAPA YPVNPMQLPE HQQHAIQQVQ QLQQQQKEQL  360
QAFWADQMAE VEQMTEFKLP NLPLARIKKI MKADEDVKMI AGEAPALFAK ACEMFILDMT  420
LRSWQHTEEG RRRTLQRSDV EAVIKKTDIF DFLVDIITDD KMKDDGMGSQ AASMVSPYTS  480
GGMGFSFDLY PNQHHLAYMW PPQEQQEQWP PQEQQEQKQK QDSDGGGQDE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B1e-40367457393NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1431437RRTLQRS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.180520.0callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g10560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g10560
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038750.0AP003875.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1119_C05.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ0J7B20.0Q0J7B2_ORYSJ; Os08g0206500 protein
STRINGOBART08G06030.11e-179(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169771112
Representative plantOGRP31517117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.24e-48nuclear factor Y, subunit C2