PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os08g10080.1 | ||||||||
Common Name | LOC4344902, Os08g0200600, OSJNBa0073I05.109-1, OSNPB_080200600, P0556A11.29-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 294aa MW: 32201.6 Da PI: 8.5858 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160 | 9e-50 | 11 | 158 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....lelee.....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 +ppGfrFhP+d+elv +yL +k+++ +i +vd++k+ePwdLp ++ + kewyfFs rd+kyatg+r+nrat+sgyW LOC_Os08g10080.1 11 MPPGFRFHPRDDELVLDYLLHKLAAGGrgggvY---GggggvAIVDVDLNKCEPWDLPDAACVGGKEWYFFSLRDRKYATGHRTNRATRSGYW 100 79********************99888555541...1455546***************7666789**************************** PP NAM 84 katgkdkevlsk......kgel........vglkktLvfykgrapkgektdWvmheyrle 129 katgkd++++++ + vg++ktLvfy+grapkg+kt+Wvmhe+rle LOC_Os08g10080.1 101 KATGKDRSITRRssissgE--PsssaaaaaVGMRKTLVFYRGRAPKGRKTEWVMHEFRLE 158 ***********86666550..155566666***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.28E-56 | 4 | 176 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.995 | 11 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.4E-26 | 12 | 157 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020104 | anatomy | leaf sheath |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MSFIGMVEAR MPPGFRFHPR DDELVLDYLL HKLAAGGRGG GVYGGGGGVA IVDVDLNKCE 60 PWDLPDAACV GGKEWYFFSL RDRKYATGHR TNRATRSGYW KATGKDRSIT RRSSISSGEP 120 SSSAAAAAVG MRKTLVFYRG RAPKGRKTEW VMHEFRLEPQ PLHLKEDWVL CRVFYKTRQT 180 IPSPSSEEAV TLPNELDLPA TPSLPPLIDA YIAFDSAPTT TPSMVGSYEQ VSCFSGLPAL 240 PMKGSISFGD LLAMDTSAEK KAIRVLHNSN TAKLELSPDW GQESGLSQMW NPQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-43 | 6 | 176 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-43 | 6 | 176 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-43 | 6 | 176 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-43 | 6 | 176 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-43 | 6 | 176 | 15 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-43 | 6 | 176 | 15 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-43 | 6 | 176 | 15 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-43 | 6 | 176 | 15 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-43 | 6 | 176 | 15 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-43 | 6 | 176 | 15 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-43 | 6 | 176 | 15 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-43 | 6 | 176 | 15 | 168 | NAC domain-containing protein 19 |
4dul_A | 2e-43 | 6 | 176 | 12 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-43 | 6 | 176 | 12 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.26957 | 0.0 | flower| leaf| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32990805 | 0.0 | ||||
Expression Atlas | Q6Z1A3 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os08g10080.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os08g10080 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK120197 | 0.0 | AK120197.1 Oryza sativa Japonica Group cDNA clone:J013036M14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648318.1 | 0.0 | NAC domain-containing protein 21/22 isoform X1 | ||||
Swissprot | Q84TE6 | 8e-79 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | Q6Z1A3 | 0.0 | Q6Z1A3_ORYSJ; Os08g0200600 protein | ||||
STRING | OS08T0200600-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1012 | 37 | 138 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 1e-76 | NAC domain containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os08g10080.1 |
Entrez Gene | 4344902 |