PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g09900.1
Common NameLOC4344890, Os08g0198900, OsJ_26364
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 855aa    MW: 95172.9 Da    PI: 6.7543
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g09900.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY452.1e-1462119259
                       --SS-EEEEEEE--TT-SS-EEE.EEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsY.YrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       dDg++Wr  Gq +++g  +p  + Y+C+ ++C v+k + rsa d++++e++ +g Hnh+
  LOC_Os08g09900.1  62 DDGFHWRMCGQSTIQGGLCPTVFsYQCALPNCGVRKSITRSA-DGQTIETVCKGCHNHP 119
                       8*******************9988******************.***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182902.48E-1455120IPR003657WRKY domain
PROSITE profilePS5081112.356121IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-1257120IPR003657WRKY domain
SMARTSM007749.1E-761120IPR003657WRKY domain
PfamPF031064.1E-1362119IPR003657WRKY domain
SMARTSM006141.1E-16234285IPR003656Zinc finger, BED-type
PROSITE profilePS508089.908234293IPR003656Zinc finger, BED-type
SuperFamilySSF576671.19E-7237285No hitNo description
PfamPF028929.6E-7249292IPR003656Zinc finger, BED-type
SuperFamilySSF530984.63E-90370839IPR012337Ribonuclease H-like domain
PfamPF143721.4E-22611710IPR025525hAT-like transposase, RNase-H fold
PfamPF056992.6E-18755837IPR008906HAT, C-terminal dimerisation domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020104anatomyleaf sheath
Sequence ? help Back to Top
Protein Sequence    Length: 855 aa     Download sequence    Send to blast
MENQSGQPQY AMADQGFHPF SPFMLAPSTT MQQHVGSSSS TPVIQVAALP SHAYYGNIDV  60
ADDGFHWRMC GQSTIQGGLC PTVFSYQCAL PNCGVRKSIT RSADGQTIET VCKGCHNHPR  120
QSLRWLGDGS ERLEPISQEI VLLEASDASG AAGGPSVPGT GNGHGQSSGS SDSCRDDDGD  180
LGIDGNASVG DANAVKSGQV PAPAKEITVH SACEVDILNN SVRHENPQPR KKVRSKSTVW  240
EEFEVVLIDG KVQTAECKHC KKGLSAKTSG GTSHLIRHLK ICPAQHGTSR VQKKCSSLAD  300
LPIVKSWKDD QESSLDEIIR SIVSNLCPFS AMYSASFAQF LAGRNPVLNM VQQATVEEKF  360
LSVFHNEKMK LKEKITATPG GVFLSLGEWQ RLFYIQVRVA CLTVHFIDED WKINRKTIRC  420
SLSVFGKSDI LSLYPHWQSD IVLAEKVLKE VVQDWGLLDK LLGVTLQRSV DKKAPLHLED  480
DITGRNYLLS KCRLLSIPCM VDALHELMDS TVLDMESTWS HYMTSSPERK QKYQEILSQL  540
HLDRPSLGSK GWYFTFYFSE AALQFIKSFP LPDAKPNCQS GPWEPSFDDL EATENYCKIA  600
RSAYRVIKVV SGPHNMTFNS YFHVIWSLRA AIQELPSIKN IGRVFDVAYM QKKFDRNWKK  660
WYLWLSIAVV LDPRYKLGFI ELCFRQAFSH VAGMYFSEVR AKLHELYIQY SYVNEQSKEI  720
LDHKNNCSDI QISAPLHNKG QNSTTAQAAV EEFKELYEYL GGGLCTQDDS FDILKWWRGN  780
SSAYPTLAMM ARDILAIPGC AVSTESAFDQ CDQRAELFDG KLRPETTEAL ICAQSWIKSS  840
GTADADDGNK NTSF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.269460.0callus| leaf| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329889050.0
Expression AtlasQ0J7E9-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g09900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g09900
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1036960.0AK103696.1 Oryza sativa Japonica Group cDNA clone:J033136J23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648157.10.0zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1
TrEMBLQ0J7E90.0Q0J7E9_ORYSJ; Os08g0198900 protein
STRINGORUFI08G06360.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140321024
Representative plantOGRP1143025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.13e-12WRKY DNA-binding protein 4